LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
LINC00242
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437615
Biotype: lincRNA
Gene id: ENSG00000229214
Gene Name: LINC00242
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2111-2125
0.018
3
6mer
2106-2125
0.005
3
6mer
792-817
0.003
1
RP11-158G18.1
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607148
Biotype: sense_intronic
Gene id: ENSG00000272477
Gene Name: RP11-158G18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
862-888
0.026
3
RP11-344G13.1
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503929
Biotype: lincRNA
Gene id: ENSG00000248872
Gene Name: RP11-344G13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3074-3088
0.007
Not Conserved
7mer
2132-2152
0.006
Not Conserved
6mer
411-423
0.005
0
6mer
2886-2901
0.004
0
6mer
3112-3116
0.003
0
6mer
2384-2388
0.002
0
RP11-463I20.3
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560140
Biotype: lincRNA
Gene id: ENSG00000259181
Gene Name: RP11-463I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-182
0.026
1
RP11-35G9.3
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592201
Biotype: antisense
Gene id: ENSG00000267040
Gene Name: RP11-35G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1507-1516
0.008
Not Conserved
6mer
1558-1562
0.004
1
6mer
1229-1246
0.004
1
6mer
1357-1379
0.004
1
6mer
694-706
0.003
2
6mer
1486-1509
0.002
Not Conserved
HOXA10-AS
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000523790
Biotype: antisense
Gene id: ENSG00000253187
Gene Name: HOXA10-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1063-1068
0.017
4
6mer
1098-1110
0.008
7
ASTN2-AS1
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418250
Biotype: antisense
Gene id: ENSG00000229105
Gene Name: ASTN2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1527-1544
0.018
5
6mer
1466-1487
0.007
6
C14orf182
hsa-miR-299-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000528300
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2228-2248
0.011
1
7mer
548-570
0.008
0
6mer
74-78
0.007
1
RP11-315O6.1
hsa-miR-299-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528717
Biotype: antisense
Gene id: ENSG00000255337
Gene Name: RP11-315O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-587
0.021
2
6mer
316-333
0.005
2
XLOC_011889
hsa-miR-299-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024596
Biotype: transcript isomorph
Gene id: XLOC_011889
Gene Name: XLOC_011889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1102-1108
0.020
0
6mer
259-263
0.005
1
MIR133A1HG
hsa-miR-299-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-490
0.013
1
7mer
3510-3534
0.008
4
6mer
3831-3835
0.005
4
CTD-2554C21.2
hsa-miR-299-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590433
Biotype: lincRNA
Gene id: ENSG00000267640
Gene Name: CTD-2554C21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
686-704
0.014
0
6mer
953-957
0.007
1
6mer
907-930
0.004
1
NUTM2B-AS1
hsa-miR-299-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000610681
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-33
0.016
1
7mer
387-408
0.006
Not Conserved
6mer
1099-1116
0.003
0
LINC01438
hsa-miR-299-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512794
Biotype: lincRNA
Gene id: ENSG00000249519
Gene Name: LINC01438
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
519-534
0.025
5
ENOX1-AS1
hsa-miR-299-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2571-2576
0.010
2
6mer
3850-3870
0.008
2
7mer
2361-2378
0.006
1
6mer
999-1017
0.002
2
LINC01010
hsa-miR-299-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038218.1
Biotype: lincRNA
Gene id: NR_038218.1 (gene)
Gene Name: LINC01010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1420-1440
0.018
1
6mer
1341-1345
0.007
3
XLOC_004805
hsa-miR-299-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010927
Biotype: transcript isomorph
Gene id: XLOC_004805
Gene Name: XLOC_004805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
936-942
0.025
1
RP13-497K6.1
hsa-miR-299-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506514
Biotype: antisense
Gene id: ENSG00000249453
Gene Name: RP13-497K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-397
0.020
3
6mer
276-295
0.005
1
RP11-983C2.2
hsa-miR-299-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000507482
Biotype: lincRNA
Gene id: ENSG00000249873
Gene Name: RP11-983C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1185-1196
0.020
2
6mer
486-490
0.006
2
LOC101593348
hsa-miR-299-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_103497.1
Biotype: antisense
Gene id: NR_103497.1 (gene)
Gene Name: LOC101593348
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2285-2302
0.017
3
7mer
458-476
0.008
0
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