LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP11-96D1.10
hsa-miR-299-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571975
Biotype: sense_overlapping
Gene id: ENSG00000263276
Gene Name: RP11-96D1.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-47
0.020
0
6mer
2906-2922
0.006
5
RP11-747D18.1
hsa-miR-299-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472120
Biotype: lincRNA
Gene id: ENSG00000239205
Gene Name: RP11-747D18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1717-1731
0.021
3
6mer
623-650
0.005
2
LINC00635
hsa-miR-299-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608307
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-111
0.026
0
XLOC_009313
hsa-miR-299-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019513
Biotype: transcript isomorph
Gene id: XLOC_009313
Gene Name: XLOC_009313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
484-508
0.026
0
WWC2-AS2
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_024008.1
Biotype: lincRNA
Gene id: NR_024008.1 (gene)
Gene Name: WWC2-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
90-94
0.008
2
7mer
547-572
0.007
1
6mer
104-108
0.006
2
6mer
109-113
0.005
1
XXbac-BPG181B23.7
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606743
Biotype: lincRNA
Gene id: ENSG00000272221
Gene Name: XXbac-BPG181B23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1055-1078
0.020
1
6mer
1007-1014
0.006
1
RP11-131K5.1
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581533
Biotype: lincRNA
Gene id: ENSG00000266744
Gene Name: RP11-131K5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
342-351
0.026
1
AP000318.2
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427022
Biotype: lincRNA
Gene id: ENSG00000214955
Gene Name: AP000318.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-661
0.020
3
6mer
202-215
0.006
3
LIFR-AS1
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514291
Biotype: antisense
Gene id: ENSG00000244968
Gene Name: LIFR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
613-627
0.026
1
TPTEP1
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588424
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1414-1424
0.013
1
7mer
1053-1070
0.012
0
RP11-362A1.1
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550506
Biotype: lincRNA
Gene id: ENSG00000257747
Gene Name: RP11-362A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
940-946
0.018
1
7mer
913-925
0.005
0
6mer
1094-1108
0.004
0
RP11-983C2.2
hsa-miR-299-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544727
Biotype: lincRNA
Gene id: ENSG00000249873
Gene Name: RP11-983C2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-217
0.026
2
XLOC_006309
hsa-miR-299-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013653
Biotype: transcript isomorph
Gene id: XLOC_006309
Gene Name: XLOC_006309
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-920
0.012
1
6mer
701-719
0.005
1
6mer
349-376
0.004
1
6mer
446-470
0.004
1
C5orf27
hsa-miR-299-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000620167
Biotype: lincRNA
Gene id: ENSG00000236882
Gene Name: C5orf27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-524
0.026
3
AC073133.1
hsa-miR-299-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436670
Biotype: lincRNA
Gene id: ENSG00000233878
Gene Name: AC073133.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-134
0.026
6
RP11-327F22.1
hsa-miR-299-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563315
Biotype: antisense
Gene id: ENSG00000260929
Gene Name: RP11-327F22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-65
0.026
3
HOXB-AS3
hsa-miR-299-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000477144
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
722-726
0.015
8
6mer
702-718
0.010
5
RP11-172H24.4
hsa-miR-299-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610494
Biotype: antisense
Gene id: ENSG00000278291
Gene Name: RP11-172H24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3071-3092
0.022
3
6mer
955-969
0.003
1
DAB1-AS1
hsa-miR-299-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588227
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1023-1027
0.011
4
7mer
918-939
0.010
Not Conserved
6mer
448-456
0.004
1
DLX6-AS1
hsa-miR-299-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8217-8223
0.008
1
6mer
15256-15271
0.006
0
8mer
12124-12144
0.004
2
6mer
14666-14687
0.003
0
6mer
3842-3846
0.003
3
6mer
6358-6383
0.002
2
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