LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP11-218E20.3
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553648
Biotype: lincRNA
Gene id: ENSG00000258711
Gene Name: RP11-218E20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3975-4000
0.007
1
7mer
4074-4089
0.006
1
7mer
3493-3511
0.006
1
8mer
3457-3469
0.006
1
6mer
3723-3739
0.002
1
MEG3
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000455531
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4693-4719
0.011
1
6mer
4551-4574
0.006
1
6mer
682-686
0.004
1
6mer
3615-3623
0.003
4
6mer
4320-4324
0.003
Not Conserved
CTC-441N14.1
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505209
Biotype: antisense
Gene id: ENSG00000249610
Gene Name: CTC-441N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-150
0.026
5
LINC01021
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512067
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1414-1430
0.026
1
XLOC_007266
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015908
Biotype: transcript isomorph
Gene id: XLOC_007266
Gene Name: XLOC_007266
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-223
0.026
1
AC017048.2
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431455
Biotype: lincRNA
Gene id: ENSG00000236231
Gene Name: AC017048.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-219
0.026
8
ERVH48-1
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
383-404
0.016
0
6mer
1333-1337
0.011
0
LINC01224
hsa-miR-299-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
157-161
0.011
0
6mer
44-48
0.010
0
6mer
685-698
0.005
0
RP11-94L15.2
hsa-miR-299-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
594-611
0.008
9
6mer
6007-6020
0.008
4
6mer
459-475
0.007
7
6mer
2009-2032
0.002
4
6mer
4856-4867
0.001
0
XLOC_010806
hsa-miR-299-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022970
Biotype: transcript isomorph
Gene id: XLOC_010806
Gene Name: XLOC_010806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-366
0.010
3
6mer
844-856
0.007
4
6mer
317-321
0.005
4
6mer
230-245
0.003
0
RP11-284A20.2
hsa-miR-299-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510242
Biotype: lincRNA
Gene id: ENSG00000249261
Gene Name: RP11-284A20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
796-805
0.020
4
6mer
50-74
0.006
0
RP11-1069G10.1
hsa-miR-299-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558888
Biotype: antisense
Gene id: ENSG00000259370
Gene Name: RP11-1069G10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
43-47
0.006
2
7mer
4326-4351
0.006
2
6mer
7344-7356
0.004
2
6mer
1605-1629
0.002
1
6mer
5251-5259
0.002
1
6mer
5709-5727
0.002
4
6mer
1234-1238
0.001
Not Conserved
6mer
4315-4324
0.001
4
6mer
5027-5043
0.001
1
6mer
1452-1469
0.001
1
RP11-756K15.2
hsa-miR-299-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519714
Biotype: lincRNA
Gene id: ENSG00000253871
Gene Name: RP11-756K15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1470-1485
0.026
2
RP1-27K12.2
hsa-miR-299-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000503985
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2519-2527
0.026
1
XLOC_003604
hsa-miR-299-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008156
Biotype: transcript isomorph
Gene id: XLOC_003604
Gene Name: XLOC_003604
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
600-613
0.026
1
XLOC_003491
hsa-miR-299-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007500
Biotype: transcript isomorph
Gene id: XLOC_003491
Gene Name: XLOC_003491
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
912-917
0.021
1
6mer
192-196
0.005
0
XLOC_005392
hsa-miR-299-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4721-4733
0.009
0
7mer
5204-5222
0.006
1
6mer
8995-9015
0.005
1
6mer
3157-3161
0.002
2
6mer
6921-6933
0.002
2
6mer
8376-8399
0.001
1
6mer
6949-6963
0.001
0
CASC17
hsa-miR-299-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000569074
Biotype: lincRNA
Gene id: ENSG00000260785
Gene Name: CASC17
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
743-762
0.009
2
7mer
1377-1394
0.009
2
6mer
1814-1827
0.008
4
XLOC_010843
hsa-miR-299-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022347
Biotype: transcript isomorph
Gene id: XLOC_010843
Gene Name: XLOC_010843
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2161-2184
0.020
0
6mer
1791-1807
0.004
3
6mer
1263-1279
0.002
1
AC008277.1
hsa-miR-299-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608714
Biotype: antisense
Gene id: ENSG00000223642
Gene Name: AC008277.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-121
0.023
5
6mer
243-261
0.004
0
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