LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP11-216M21.7
hsa-miR-299-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1902-1922
0.024
0
6mer
2336-2358
0.002
Not Conserved
XLOC_013693
hsa-miR-299-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028343
Biotype: transcript isomorph
Gene id: XLOC_013693
Gene Name: XLOC_013693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-274
0.015
0
6mer
12-16
0.006
1
6mer
238-242
0.005
1
AC008277.1
hsa-miR-299-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594921
Biotype: antisense
Gene id: ENSG00000223642
Gene Name: AC008277.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-98
0.023
5
6mer
220-238
0.004
0
XLOC_005602
hsa-miR-299-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011130
Biotype: transcript isomorph
Gene id: XLOC_005602
Gene Name: XLOC_005602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2579-2588
0.024
0
6mer
2895-2904
0.003
1
RP11-223P11.3
hsa-miR-299-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000599979
Biotype: antisense
Gene id: ENSG00000223528
Gene Name: RP11-223P11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
771-794
0.019
3
6mer
635-642
0.007
4
XLOC_001401
hsa-miR-299-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
59-63
0.017
0
6mer
793-808
0.009
0
RP11-108B14.5
hsa-miR-299-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564681
Biotype: lincRNA
Gene id: ENSG00000260205
Gene Name: RP11-108B14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3073-3077
0.008
1
6mer
3029-3044
0.007
1
6mer
290-300
0.005
0
6mer
104-120
0.004
0
6mer
1546-1550
0.003
2
AC024028.1
hsa-miR-299-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437145
Biotype: lincRNA
Gene id: ENSG00000228334
Gene Name: AC024028.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-245
0.021
6
6mer
235-239
0.006
2
LINC00683
hsa-miR-299-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578803
Biotype: lincRNA
Gene id: ENSG00000266256
Gene Name: LINC00683
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1954-1971
0.027
1
RP11-131L12.4
hsa-miR-299-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610630
Biotype: lincRNA
Gene id: ENSG00000275409
Gene Name: RP11-131L12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-532
0.027
1
AC078883.3
hsa-miR-299-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000458314
Biotype: antisense
Gene id: ENSG00000232788
Gene Name: AC078883.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-236
0.011
1
6mer
60-64
0.008
2
6mer
368-380
0.007
4
RP1-161P9.5
hsa-miR-299-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000603816
Biotype: sense_intronic
Gene id: ENSG00000271392
Gene Name: RP1-161P9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-120
0.017
1
6mer
351-364
0.006
2
6mer
416-426
0.004
1
RP1-27K12.2
hsa-miR-299-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506206
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-375
0.026
1
RP11-339A11.2
hsa-miR-299-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567886
Biotype: lincRNA
Gene id: ENSG00000260322
Gene Name: RP11-339A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1832-1841
0.017
0
6mer
103-121
0.010
1
XLOC_001134
hsa-miR-299-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001765
Biotype: transcript isomorph
Gene id: XLOC_001134
Gene Name: XLOC_001134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2470-2494
0.013
8
7mer
471-482
0.011
1
6mer
1950-1968
0.002
2
XLOC_006976
hsa-miR-299-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-87
0.026
Not Conserved
AC074286.1
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000397057
Biotype: sense_overlapping
Gene id: ENSG00000213963
Gene Name: AC074286.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-361
0.017
3
7mer
2474-2488
0.006
1
6mer
3827-3853
0.002
0
6mer
1671-1694
0.001
Not Conserved
RP11-1137G4.3
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593558
Biotype: antisense
Gene id: ENSG00000268845
Gene Name: RP11-1137G4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-288
0.026
3
CTD-2207A17.1
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508853
Biotype: lincRNA
Gene id: ENSG00000248461
Gene Name: CTD-2207A17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2545-2565
0.011
0
7mer
349-354
0.009
1
6mer
159-178
0.004
1
6mer
1917-1926
0.003
1
LINC01364
hsa-miR-299-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452509
Biotype: lincRNA
Gene id: ENSG00000227290
Gene Name: LINC01364
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-11
0.026
4
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