LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
CTD-2008P7.10
hsa-miR-299-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587058
Biotype: lincRNA
Gene id: ENSG00000267644
Gene Name: CTD-2008P7.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-602
0.027
0
CH17-264L24.1
hsa-miR-299-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8308-8312
0.008
0
7mer
6008-6013
0.006
0
8mer+wobble
7149-7168
0.003
0
6mer
6760-6784
0.003
1
6mer
7042-7046
0.003
0
6mer
6383-6406
0.002
0
7mer
6050-6076
0.002
0
6mer
3141-3162
0.001
Not Conserved
XLOC_009993
hsa-miR-299-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020691
Biotype: transcript isomorph
Gene id: XLOC_009993
Gene Name: XLOC_009993
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-247
0.027
3
RP11-223P11.3
hsa-miR-299-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000622832
Biotype: antisense
Gene id: ENSG00000223528
Gene Name: RP11-223P11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
549-572
0.019
3
6mer
110-117
0.008
4
RBPMS-AS1
hsa-miR-299-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517521
Biotype: antisense
Gene id: ENSG00000254109
Gene Name: RBPMS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-487
0.027
4
RP11-86H7.6
hsa-miR-299-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413541
Biotype: lincRNA
Gene id: ENSG00000223675
Gene Name: RP11-86H7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1439-1463
0.023
0
6mer
242-246
0.005
0
KCNMA1-AS1
hsa-miR-299-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600782
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
758-785
0.025
6
6mer
791-810
0.002
0
LINC01431
hsa-miR-299-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000452395
Biotype: lincRNA
Gene id: ENSG00000232645
Gene Name: LINC01431
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-73
0.019
0
6mer
37-41
0.008
1
FAM99A
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000382167
Biotype: lincRNA
Gene id: ENSG00000205866
Gene Name: FAM99A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-379
0.027
3
XLOC_006773
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014674
Biotype: transcript isomorph
Gene id: XLOC_006773
Gene Name: XLOC_006773
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-211
0.024
5
6mer
514-522
0.003
1
AC004941.3
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000417506
Biotype: antisense
Gene id: ENSG00000228151
Gene Name: AC004941.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-94
0.024
0
6mer
762-777
0.003
1
RBPMS-AS1
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519753
Biotype: antisense
Gene id: ENSG00000254109
Gene Name: RBPMS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-482
0.027
4
XLOC_003468
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008002
Biotype: transcript isomorph
Gene id: XLOC_003468
Gene Name: XLOC_003468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-517
0.027
2
RP11-63M22.1
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565082
Biotype: lincRNA
Gene id: ENSG00000260558
Gene Name: RP11-63M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-186
0.027
Not Conserved
RP11-946L20.4
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522778
Biotype: lincRNA
Gene id: ENSG00000253103
Gene Name: RP11-946L20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-188
0.019
0
6mer
432-436
0.008
1
XLOC_013010
hsa-miR-299-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
332-348
0.018
0
6mer
854-873
0.009
0
CTB-113D17.1
hsa-miR-299-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2820-2833
0.010
6
6mer
478-493
0.009
5
6mer
1078-1092
0.003
1
6mer
2575-2596
0.002
1
6mer
2092-2103
0.001
1
6mer
1693-1705
0.001
1
RP11-21C17.1
hsa-miR-299-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520780
Biotype: lincRNA
Gene id: ENSG00000253373
Gene Name: RP11-21C17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-243
0.027
1
CTC-338M12.4
hsa-miR-299-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109909.1
Biotype: antisense
Gene id: NR_109909.1 (gene)
Gene Name: CTC-338M12.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
977-999
0.027
1
LINC00597
hsa-miR-299-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026813.1
Biotype: sense
Gene id: NR_026813.1 (gene)
Gene Name: LINC00597
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
44-60
0.011
4
6mer
313-317
0.008
6
6mer
483-499
0.005
1
6mer
978-1005
0.003
1
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