LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
AC009542.2
hsa-miR-299-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412549
Biotype: antisense
Gene id: ENSG00000231794
Gene Name: AC009542.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-235
0.008
0
6mer
259-285
0.005
2
8mer
934-944
0.005
1
6mer
638-664
0.004
1
6mer
341-356
0.003
Not Conserved
6mer
850-861
0.003
1
XLOC_007726
hsa-miR-299-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016345
Biotype: transcript isomorph
Gene id: XLOC_007726
Gene Name: XLOC_007726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-153
0.028
0
XLOC_013690
hsa-miR-299-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028641
Biotype: transcript isomorph
Gene id: XLOC_013690
Gene Name: XLOC_013690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1113-1117
0.008
0
6mer
1066-1070
0.007
0
6mer
1028-1042
0.007
0
6mer
872-876
0.006
0
HCFC1-AS1
hsa-miR-299-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438219
Biotype: antisense
Gene id: ENSG00000235802
Gene Name: HCFC1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-150
0.028
1
CTD-2554C21.2
hsa-miR-299-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586819
Biotype: lincRNA
Gene id: ENSG00000267640
Gene Name: CTD-2554C21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-276
0.016
0
6mer
525-529
0.008
1
6mer
479-502
0.004
1
LANCL1-AS1
hsa-miR-299-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420418
Biotype: antisense
Gene id: ENSG00000234281
Gene Name: LANCL1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-30
0.020
1
6mer
283-310
0.008
4
AC079466.1
hsa-miR-299-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3109-3122
0.024
1
6mer
2671-2698
0.004
1
XLOC_003638
hsa-miR-299-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008189
Biotype: transcript isomorph
Gene id: XLOC_003638
Gene Name: XLOC_003638
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
44-64
0.020
1
6mer
332-339
0.008
0
RP11-343L5.2
hsa-miR-299-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607625
Biotype: lincRNA
Gene id: ENSG00000271862
Gene Name: RP11-343L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-484
0.028
6
XLOC_008528
hsa-miR-299-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-607
0.021
1
6mer
3328-3351
0.004
0
6mer
1611-1638
0.002
1
RP1-27K12.2
hsa-miR-299-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000502390
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3136-3144
0.028
1
AC007349.4
hsa-miR-299-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419326
Biotype: lincRNA
Gene id: ENSG00000229424
Gene Name: AC007349.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-57
0.024
0
6mer
179-198
0.004
1
XLOC_010037
hsa-miR-299-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020749
Biotype: transcript isomorph
Gene id: XLOC_010037
Gene Name: XLOC_010037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
669-689
0.028
1
CTC-338M12.4
hsa-miR-299-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000417281
Biotype: antisense
Gene id: ENSG00000233937
Gene Name: CTC-338M12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-615
0.028
1
LINC01054
hsa-miR-299-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000446989
Biotype: antisense
Gene id: ENSG00000229723
Gene Name: LINC01054
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-23
0.028
1
FLJ22763
hsa-miR-299-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000622536
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
33-53
0.012
8
7mer
541-556
0.011
1
6mer
278-302
0.005
4
XLOC_012150
hsa-miR-299-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025337
Biotype: transcript isomorph
Gene id: XLOC_012150
Gene Name: XLOC_012150
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1052-1057
0.021
0
6mer
492-504
0.007
1
XLOC_013072
hsa-miR-299-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027541
Biotype: transcript isomorph
Gene id: XLOC_013072
Gene Name: XLOC_013072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
427-431
0.010
0
6mer
74-83
0.009
0
6mer
439-443
0.009
0
KIRREL3-AS3
hsa-miR-299-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525678
Biotype: antisense
Gene id: ENSG00000218109
Gene Name: KIRREL3-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1753-1758
0.028
6
MIR7-3HG
hsa-miR-299-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588923
Biotype: lincRNA
Gene id: ENSG00000176840
Gene Name: MIR7-3HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-600
0.028
4
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