LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
AC114776.3
hsa-miR-299-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
487-491
0.012
1
6mer
1523-1541
0.007
1
6mer
1842-1866
0.005
1
7mer
1779-1799
0.005
0
XLOC_006016
hsa-miR-299-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013381
Biotype: transcript isomorph
Gene id: XLOC_006016
Gene Name: XLOC_006016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1932-1945
0.017
1
6mer
523-539
0.010
9
6mer
1110-1133
0.002
2
TRPC5OS
hsa-miR-299-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000371970
Biotype: antisense
Gene id: ENSG00000204025
Gene Name: TRPC5OS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2723-2745
0.017
1
7mer
552-562
0.012
3
AC034220.3
hsa-miR-299-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000616965
Biotype: antisense
Gene id: ENSG00000233006
Gene Name: AC034220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
441-462
0.002
1
CTA-796E4.5
hsa-miR-299-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
31576-31599
0.007
3
6mer
711-715
0.004
4
6mer
31526-31551
0.003
1
6mer
7651-7655
0.002
3
6mer
6293-6320
0.002
4
6mer
15701-15705
0.002
1
6mer
4224-4241
0.002
2
6mer
22164-22168
0.002
0
6mer
19174-19194
0.001
0
6mer
14944-14962
0.001
Not Conserved
6mer
15239-15258
0.001
0
6mer
7263-7278
0.001
1
RP11-93B14.10
hsa-miR-299-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620143
Biotype: antisense
Gene id: ENSG00000276317
Gene Name: RP11-93B14.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-378
0.029
1
RP11-375H19.2
hsa-miR-299-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000366136
Biotype: antisense
Gene id: ENSG00000203307
Gene Name: RP11-375H19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-542
0.029
1
RP11-671J11.4
hsa-miR-299-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555361
Biotype: antisense
Gene id: ENSG00000259135
Gene Name: RP11-671J11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-397
0.029
1
TRPC5OS
hsa-miR-299-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000612026
Biotype: antisense
Gene id: ENSG00000204025
Gene Name: TRPC5OS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2742-2764
0.017
1
7mer
571-581
0.012
3
LINC00426
hsa-miR-299-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000416261
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
312-323
0.024
1
6mer
263-287
0.005
1
DLX6-AS1
hsa-miR-299-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605417
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3651-3676
0.019
9
6mer
4104-4119
0.006
0
8mer
1738-1758
0.004
2
XLOC_012528
hsa-miR-299-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025700
Biotype: transcript isomorph
Gene id: XLOC_012528
Gene Name: XLOC_012528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-104
0.029
6
XLOC_000199
hsa-miR-299-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2143-2168
0.019
1
6mer
948-968
0.009
1
XLOC_003026
hsa-miR-299-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006402
Biotype: transcript isomorph
Gene id: XLOC_003026
Gene Name: XLOC_003026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-734
0.016
1
7mer
49-71
0.008
Not Conserved
6mer
369-389
0.005
1
RP11-356I2.4
hsa-miR-299-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000448942
Biotype: antisense
Gene id: ENSG00000237499
Gene Name: RP11-356I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-222
0.018
3
6mer
909-924
0.006
2
6mer
719-744
0.005
1
XLOC_006637
hsa-miR-299-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013993
Biotype: transcript isomorph
Gene id: XLOC_006637
Gene Name: XLOC_006637
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-351
0.014
1
6mer
55-59
0.007
1
6mer
4-29
0.007
1
RP11-261C10.5
hsa-miR-299-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439562
Biotype: antisense
Gene id: ENSG00000227230
Gene Name: RP11-261C10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-350
0.028
9
RP1-27K12.2
hsa-miR-299-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505995
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2505-2513
0.028
1
CTD-2278I10.1
hsa-miR-299-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597592
Biotype: antisense
Gene id: ENSG00000269350
Gene Name: CTD-2278I10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-405
0.021
1
6mer
129-133
0.007
0
CTD-2314G24.2
hsa-miR-299-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000601500
Biotype: antisense
Gene id: ENSG00000259663
Gene Name: CTD-2314G24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1696-1719
0.011
9
6mer
441-450
0.004
0
7mer
1537-1555
0.004
1
7mer
1392-1404
0.003
1
6mer
6529-6545
0.003
0
6mer
2707-2727
0.002
4
6mer
1530-1555
0.001
7
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