LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP1-37J18.2
hsa-miR-299-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420522
Biotype: lincRNA
Gene id: ENSG00000232596
Gene Name: RP1-37J18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-616
0.018
0
6mer
76-97
0.006
1
6mer
650-670
0.006
2
XLOC_008765
hsa-miR-299-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017944
Biotype: transcript isomorph
Gene id: XLOC_008765
Gene Name: XLOC_008765
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
300-314
0.016
1
6mer
192-196
0.013
1
C16orf82
hsa-miR-299-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000505035
Biotype: lincRNA
Gene id: ENSG00000234186
Gene Name: C16orf82
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-300
0.017
5
6mer
2301-2314
0.004
1
6mer
643-661
0.003
1
6mer
1434-1444
0.002
1
6mer
1564-1572
0.002
2
6mer
974-992
0.002
1
XLOC_000198
hsa-miR-299-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000946
Biotype: transcript isomorph
Gene id: XLOC_000198
Gene Name: XLOC_000198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-100
0.030
Not Conserved
XLOC_011093
hsa-miR-299-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022380
Biotype: transcript isomorph
Gene id: XLOC_011093
Gene Name: XLOC_011093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-315
0.022
6
6mer
282-304
0.007
7
AC067969.2
hsa-miR-299-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595853
Biotype: antisense
Gene id: ENSG00000268055
Gene Name: AC067969.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-396
0.025
1
6mer
259-275
0.005
4
LINC00411
hsa-miR-299-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000436722
Biotype: lincRNA
Gene id: ENSG00000229599
Gene Name: LINC00411
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-125
0.029
6
KCNIP4-IT1
hsa-miR-299-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_002813.1
Biotype: sense
Gene id: NR_002813.1 (gene)
Gene Name: KCNIP4-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8895-8908
0.010
3
8mer
1669-1678
0.009
0
6mer
43-62
0.006
1
7mer
7071-7076
0.005
1
XLOC_012031
hsa-miR-299-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00025076
Biotype: transcript isomorph
Gene id: XLOC_012031
Gene Name: XLOC_012031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
747-755
0.003
1
6mer
807-815
0.003
1
6mer
837-845
0.003
1
6mer
1223-1231
0.003
0
6mer
897-905
0.003
1
6mer
935-943
0.002
1
6mer
1049-1057
0.002
1
6mer
863-871
0.002
0
6mer
1137-1160
0.002
1
6mer
969-977
0.002
0
6mer
1001-1009
0.002
0
6mer
1189-1197
0.002
0
6mer
1167-1175
0.001
0
6mer
1107-1115
0.001
0
FLVCR1-AS1
hsa-miR-299-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000356684
Biotype: lincRNA
Gene id: ENSG00000198468
Gene Name: FLVCR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-529
0.024
0
6mer
1571-1580
0.003
2
6mer
1218-1225
0.002
0
XLOC_001259
hsa-miR-299-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000762
Biotype: transcript isomorph
Gene id: XLOC_001259
Gene Name: XLOC_001259
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-73
0.017
3
6mer
2898-2920
0.005
0
6mer
180-205
0.005
0
6mer
2742-2766
0.002
0
CTD-2008P7.1
hsa-miR-299-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-721
0.020
1
6mer
99-110
0.009
1
CTD-3253I12.1
hsa-miR-299-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565238
Biotype: antisense
Gene id: ENSG00000260832
Gene Name: CTD-3253I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-150
0.024
2
6mer
1252-1270
0.005
2
LEF1-AS1
hsa-miR-299-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506314
Biotype: retained_intron
Gene id: ENSG00000232021
Gene Name: LEF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3340-3345
0.020
5
6mer
553-557
0.007
8
6mer
1369-1391
0.002
1
LINC00893
hsa-miR-299-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000447209
Biotype: antisense
Gene id: ENSG00000241769
Gene Name: LINC00893
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-132
0.029
1
AC005329.7
hsa-miR-299-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589734
Biotype: antisense
Gene id: ENSG00000248015
Gene Name: AC005329.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-20
0.029
0
XLOC_014251
hsa-miR-299-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029427
Biotype: transcript isomorph
Gene id: XLOC_014251
Gene Name: XLOC_014251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-176
0.015
3
6mer
46-50
0.012
7
6mer
557-581
0.002
1
XLOC_008729
hsa-miR-299-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017926
Biotype: transcript isomorph
Gene id: XLOC_008729
Gene Name: XLOC_008729
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-448
0.018
6
7mer
1024-1034
0.008
0
6mer
606-625
0.003
2
RP11-173D14.3
hsa-miR-299-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430931
Biotype: lincRNA
Gene id: ENSG00000229495
Gene Name: RP11-173D14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2306-2330
0.018
2
6mer
2162-2166
0.004
1
6mer
1507-1511
0.003
1
6mer
1734-1754
0.002
1
6mer
1040-1062
0.002
1
RP1-142L7.8
hsa-miR-299-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605586
Biotype: lincRNA
Gene id: ENSG00000271208
Gene Name: RP1-142L7.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.011
0
6mer
72-76
0.008
4
6mer
210-224
0.004
0
6mer
197-205
0.003
0
6mer
157-174
0.003
0
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