LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
TTN-AS1
hsa-miR-299-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431752
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-441
0.030
10
DPH6-AS1
hsa-miR-299-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501169
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1422-1444
0.018
1
7mer
1182-1193
0.012
1
RBPMS-AS1
hsa-miR-299-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523643
Biotype: antisense
Gene id: ENSG00000254109
Gene Name: RBPMS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-482
0.030
4
ERVMER61-1
hsa-miR-299-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429725
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1777-1800
0.019
1
7mer
2158-2178
0.008
Not Conserved
6mer
1489-1499
0.003
0
XLOC_005466
hsa-miR-299-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011192
Biotype: transcript isomorph
Gene id: XLOC_005466
Gene Name: XLOC_005466
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
871-898
0.016
4
8mer
1577-1600
0.007
1
6mer
1407-1411
0.004
3
6mer
603-628
0.003
2
KCTD21-AS1
hsa-miR-299-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500113
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-107
0.030
1
RP3-335N17.2
hsa-miR-299-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454361
Biotype: antisense
Gene id: ENSG00000228689
Gene Name: RP3-335N17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-489
0.023
3
6mer
581-588
0.007
0
CTA-941F9.10
hsa-miR-299-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22476-22489
0.007
4
7mer
12293-12298
0.006
1
7mer
8082-8087
0.004
0
7mer
6489-6499
0.004
2
6mer
364-377
0.004
Not Conserved
6mer
828-839
0.003
0
6mer
6988-6992
0.002
0
6mer
6839-6852
0.001
1
RP11-180N14.1
hsa-miR-299-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606582
Biotype: lincRNA
Gene id: ENSG00000272511
Gene Name: RP11-180N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-145
0.025
0
6mer
995-999
0.005
1
AC069513.4
hsa-miR-299-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423600
Biotype: lincRNA
Gene id: ENSG00000229178
Gene Name: AC069513.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1073-1096
0.025
2
6mer
795-810
0.003
0
6mer
1029-1040
0.002
0
RP11-174G6.5
hsa-miR-299-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562691
Biotype: sense_overlapping
Gene id: ENSG00000261324
Gene Name: RP11-174G6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
843-869
0.012
1
6mer
5146-5150
0.007
1
6mer
121-147
0.006
1
6mer
4461-4465
0.003
1
6mer
1088-1111
0.002
0
MIR7-3HG
hsa-miR-299-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000317292
Biotype: lincRNA
Gene id: ENSG00000176840
Gene Name: MIR7-3HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
691-696
0.030
4
XLOC_002407
hsa-miR-299-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003450
Biotype: transcript isomorph
Gene id: XLOC_002407
Gene Name: XLOC_002407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-219
0.026
8
6mer
615-626
0.004
2
LINC01431
hsa-miR-299-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442440
Biotype: lincRNA
Gene id: ENSG00000232645
Gene Name: LINC01431
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-274
0.016
0
6mer
12-16
0.007
1
6mer
238-242
0.006
1
EIF1B-AS1
hsa-miR-299-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033965.1
Biotype: antisense
Gene id: NR_033965.1 (gene)
Gene Name: EIF1B-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-656
0.030
1
RP11-115D19.2
hsa-miR-299-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000620420
Biotype: antisense
Gene id: ENSG00000276542
Gene Name: RP11-115D19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
836-850
0.022
3
6mer
767-788
0.008
2
RP11-472K22.1
hsa-miR-299-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503299
Biotype: lincRNA
Gene id: ENSG00000248176
Gene Name: RP11-472K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-746
0.024
1
6mer
57-61
0.006
0
RP11-691G17.1
hsa-miR-299-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2156-2177
0.012
1
6mer
2071-2075
0.009
1
6mer
2065-2069
0.008
1
GMDS-AS1
hsa-miR-299-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000524770
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
521-546
0.024
6
6mer
171-175
0.004
1
6mer
307-323
0.002
0
XLOC_007861
hsa-miR-299-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016482
Biotype: transcript isomorph
Gene id: XLOC_007861
Gene Name: XLOC_007861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
378-382
0.018
1
6mer
369-373
0.011
1
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