LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP11-755B10.3
hsa-miR-299-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465933
Biotype: lincRNA
Gene id: ENSG00000241933
Gene Name: RP11-755B10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-581
0.019
1
6mer
1068-1081
0.004
4
6mer
2836-2854
0.003
0
6mer
2714-2734
0.003
0
6mer
1804-1816
0.002
1
6mer
1620-1632
0.001
0
LINC01360
hsa-miR-299-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444827
Biotype: lincRNA
Gene id: ENSG00000233973
Gene Name: LINC01360
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-198
0.022
2
6mer
57-77
0.006
1
6mer
145-155
0.003
1
RP11-243J18.2
hsa-miR-299-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432858
Biotype: antisense
Gene id: ENSG00000227673
Gene Name: RP11-243J18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-109
0.031
1
RP11-15H20.6
hsa-miR-299-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2622-2641
0.019
0
6mer
1824-1849
0.012
1
XLOC_004849
hsa-miR-299-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009284
Biotype: transcript isomorph
Gene id: XLOC_004849
Gene Name: XLOC_004849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1008-1014
0.031
1
IPO9-AS1
hsa-miR-299-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421159
Biotype: antisense
Gene id: ENSG00000231871
Gene Name: IPO9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-8
0.031
6
LINC00467
hsa-miR-299-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423222
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
672-686
0.015
1
6mer
237-241
0.006
1
6mer
243-247
0.006
2
6mer
651-663
0.004
2
ASAP1-IT1
hsa-miR-299-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_002765.2
Biotype: sense
Gene id: NR_002765.2 (gene)
Gene Name: ASAP1-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
899-916
0.017
3
6mer
379-395
0.007
5
6mer
184-188
0.007
3
JAZF1-AS1
hsa-miR-299-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000444500
Biotype: antisense
Gene id: ENSG00000234336
Gene Name: JAZF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3212-3226
0.016
1
6mer
349-368
0.007
3
6mer
3592-3607
0.006
2
6mer
1637-1646
0.002
0
XLOC_010463
hsa-miR-299-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-97
0.012
1
7mer
6335-6352
0.004
Not Conserved
6mer
11345-11370
0.004
1
7mer
3089-3098
0.003
0
6mer
2205-2217
0.002
2
6mer
2973-2987
0.002
0
6mer
9845-9853
0.002
1
6mer
8642-8655
0.002
2
XLOC_009846
hsa-miR-299-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020532
Biotype: transcript isomorph
Gene id: XLOC_009846
Gene Name: XLOC_009846
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-201
0.031
1
NDUFA6-AS1
hsa-miR-299-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000595777
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-80
0.028
0
6mer
194-209
0.003
0
XLOC_000918
hsa-miR-299-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000020
Biotype: transcript isomorph
Gene id: XLOC_000918
Gene Name: XLOC_000918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4009-4032
0.029
2
6mer
1667-1681
0.001
1
HAND2-AS1
hsa-miR-299-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502896
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4211-4218
0.019
1
7mer
4063-4075
0.006
4
6mer
211-232
0.004
6
6mer
2830-2834
0.002
Not Conserved
ERVMER61-1
hsa-miR-299-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614505
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1629-1652
0.019
1
7mer
2010-2030
0.008
Not Conserved
6mer
1341-1351
0.003
0
NUTM2A-AS1
hsa-miR-299-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413961
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-240
0.024
0
6mer
406-428
0.007
0
RP11-6L6.7
hsa-miR-299-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510996
Biotype: antisense
Gene id: ENSG00000251010
Gene Name: RP11-6L6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-129
0.031
1
RP11-156E6.1
hsa-miR-299-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000560400
Biotype: sense_overlapping
Gene id: ENSG00000259623
Gene Name: RP11-156E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-718
0.024
1
6mer
1663-1682
0.003
7
6mer
983-1005
0.003
2
RP11-495P10.6
hsa-miR-299-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428035
Biotype: lincRNA
Gene id: ENSG00000234283
Gene Name: RP11-495P10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-16
0.023
1
6mer
75-98
0.007
1
RP5-884M6.1
hsa-miR-299-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000602761
Biotype: lincRNA
Gene id: ENSG00000228742
Gene Name: RP5-884M6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2028-2040
0.014
3
7mer
1611-1635
0.007
1
6mer
2605-2609
0.004
0
6mer
428-442
0.003
1
6mer
1766-1790
0.001
1
6mer
2186-2199
0.001
Not Conserved
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