LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
CTB-107G13.1
hsa-miR-299-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422488
Biotype: antisense
Gene id: ENSG00000234715
Gene Name: CTB-107G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2152-2173
0.032
1
LINC00893
hsa-miR-299-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412882
Biotype: antisense
Gene id: ENSG00000241769
Gene Name: LINC00893
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-223
0.032
0
C16orf82
hsa-miR-299-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000418886
Biotype: lincRNA
Gene id: ENSG00000234186
Gene Name: C16orf82
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-109
0.019
5
6mer
2110-2123
0.004
1
6mer
452-470
0.003
1
6mer
1243-1253
0.002
1
6mer
783-801
0.002
1
6mer
1373-1381
0.002
2
XLOC_006344
hsa-miR-299-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013682
Biotype: transcript isomorph
Gene id: XLOC_006344
Gene Name: XLOC_006344
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-525
0.032
0
SNHG14
hsa-miR-299-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000580438
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1051-1061
0.017
1
6mer
184-207
0.010
1
6mer
490-505
0.005
1
RP11-96K19.4
hsa-miR-299-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-177
0.023
0
6mer
3936-3954
0.005
1
6mer
1414-1418
0.004
0
RP11-174G17.2
hsa-miR-299-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569711
Biotype: lincRNA
Gene id: ENSG00000261781
Gene Name: RP11-174G17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2428-2453
0.015
1
6mer
1960-1964
0.005
2
6mer
137-163
0.005
1
6mer
1496-1511
0.003
2
6mer
1143-1152
0.003
1
LINC00518
hsa-miR-299-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000491317
Biotype: lincRNA
Gene id: ENSG00000183674
Gene Name: LINC00518
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-577
0.028
0
6mer
884-893
0.004
1
RP11-556O5.6
hsa-miR-299-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000594215
Biotype: lincRNA
Gene id: ENSG00000268955
Gene Name: RP11-556O5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-524
0.032
1
XLOC_001148
hsa-miR-299-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000111
Biotype: transcript isomorph
Gene id: XLOC_001148
Gene Name: XLOC_001148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-221
0.021
1
7mer
1577-1582
0.011
4
AC084809.2
hsa-miR-299-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000435733
Biotype: antisense
Gene id: ENSG00000226377
Gene Name: AC084809.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-346
0.028
3
6mer
435-460
0.003
1
RP11-297L17.3
hsa-miR-299-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565771
Biotype: lincRNA
Gene id: ENSG00000260393
Gene Name: RP11-297L17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-100
0.032
7
LINC00326
hsa-miR-299-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457339
Biotype: lincRNA
Gene id: ENSG00000231023
Gene Name: LINC00326
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
871-898
0.016
4
8mer
1577-1600
0.008
1
6mer
1407-1411
0.004
3
6mer
603-628
0.003
2
RP11-17M24.1
hsa-miR-299-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584758
Biotype: sense_intronic
Gene id: ENSG00000265356
Gene Name: RP11-17M24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
481-494
0.032
1
XLOC_001621
hsa-miR-299-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-317
0.022
0
6mer
748-760
0.009
1
HAND2-AS1
hsa-miR-299-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507062
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3206-3213
0.020
1
7mer
3058-3070
0.006
4
6mer
298-319
0.004
6
6mer
1825-1829
0.002
Not Conserved
RP11-690D19.3
hsa-miR-299-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561652
Biotype: sense_overlapping
Gene id: ENSG00000260966
Gene Name: RP11-690D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
652-657
0.007
2
7mer
848-853
0.006
3
6mer
4917-4921
0.006
1
6mer
664-686
0.005
4
6mer
5049-5064
0.004
1
6mer
2208-2223
0.002
3
6mer
1523-1536
0.002
2
MIR181A1HG
hsa-miR-299-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436880
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-249
0.021
1
7mer
1605-1610
0.011
4
RP11-419I17.1
hsa-miR-299-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602979
Biotype: lincRNA
Gene id: ENSG00000270154
Gene Name: RP11-419I17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-162
0.031
1
CTD-2260A17.2
hsa-miR-299-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502262
Biotype: antisense
Gene id: ENSG00000247121
Gene Name: CTD-2260A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-441
0.031
1
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