LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
CTD-3138B18.5
hsa-miR-299-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597230
Biotype: antisense
Gene id: ENSG00000268516
Gene Name: CTD-3138B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-152
0.028
0
6mer
105-131
0.005
1
TTTY14
hsa-miR-299-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000324446
Biotype: lincRNA
Gene id: ENSG00000176728
Gene Name: TTTY14
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
502-519
0.033
0
HAND2-AS1
hsa-miR-299-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2129-2136
0.020
1
7mer
1981-1993
0.006
4
6mer
304-325
0.004
6
6mer
748-752
0.004
Not Conserved
HAND2-AS1
hsa-miR-299-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2206-2213
0.020
1
7mer
2058-2070
0.006
4
6mer
304-325
0.004
6
6mer
825-829
0.004
Not Conserved
RP13-131K19.7
hsa-miR-299-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609473
Biotype: lincRNA
Gene id: ENSG00000273211
Gene Name: RP13-131K19.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-35
0.033
6
WWC2-AS2
hsa-miR-299-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000578387
Biotype: lincRNA
Gene id: ENSG00000251359
Gene Name: WWC2-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
94-98
0.008
2
7mer
551-576
0.007
1
6mer
5-9
0.006
Not Conserved
6mer
108-112
0.006
2
6mer
113-117
0.005
1
LINC01010
hsa-miR-299-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431422
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1677-1682
0.019
4
7mer
1454-1474
0.009
1
6mer
1375-1379
0.005
3
AC004076.5
hsa-miR-299-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620532
Biotype: antisense
Gene id: ENSG00000276449
Gene Name: AC004076.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-446
0.021
0
6mer
2984-2988
0.006
0
6mer
2904-2908
0.003
0
6mer
1184-1188
0.002
Not Conserved
XLOC_004945
hsa-miR-299-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010430
Biotype: transcript isomorph
Gene id: XLOC_004945
Gene Name: XLOC_004945
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1503-1508
0.019
3
6mer
914-922
0.005
3
6mer
1254-1279
0.005
2
6mer
640-658
0.003
1
CTD-2260A17.2
hsa-miR-299-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504056
Biotype: antisense
Gene id: ENSG00000247121
Gene Name: CTD-2260A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-402
0.032
1
HAND2-AS1
hsa-miR-299-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2341-2348
0.020
1
7mer
2193-2205
0.006
4
6mer
304-325
0.004
6
6mer
960-964
0.003
Not Conserved
CTD-2536I1.3
hsa-miR-299-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616660
Biotype: lincRNA
Gene id: ENSG00000273923
Gene Name: CTD-2536I1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
331-345
0.032
0
AC008154.4
hsa-miR-299-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420268
Biotype: antisense
Gene id: ENSG00000231098
Gene Name: AC008154.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-403
0.016
1
7mer
152-157
0.016
2
DLX6-AS1
hsa-miR-299-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000458352
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1183-1208
0.029
9
6mer
567-588
0.004
0
AC008163.4
hsa-miR-299-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412900
Biotype: lincRNA
Gene id: ENSG00000234113
Gene Name: AC008163.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20-33
0.032
1
RP11-63B19.1
hsa-miR-299-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427173
Biotype: lincRNA
Gene id: ENSG00000236720
Gene Name: RP11-63B19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
916-937
0.032
0
XLOC_010769
hsa-miR-299-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1394-1412
0.023
1
6mer
2413-2425
0.007
0
6mer
1394-1417
0.003
1
LINC00824
hsa-miR-299-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518044
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-27
0.027
3
6mer
104-120
0.005
1
XLOC_006938
hsa-miR-299-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014869
Biotype: transcript isomorph
Gene id: XLOC_006938
Gene Name: XLOC_006938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-327
0.032
9
RP11-1006G14.2
hsa-miR-299-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565543
Biotype: lincRNA
Gene id: ENSG00000259783
Gene Name: RP11-1006G14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
199-203
0.017
0
6mer
357-366
0.015
0
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