LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
CHODL-AS1
hsa-miR-299-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447175
Biotype: lincRNA
Gene id: ENSG00000231755
Gene Name: CHODL-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1000-1013
0.019
4
7mer
1026-1035
0.015
1
LINC01450
hsa-miR-299-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443406
Biotype: lincRNA
Gene id: ENSG00000232458
Gene Name: LINC01450
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-372
0.011
1
6mer
405-409
0.005
3
6mer
144-159
0.004
0
7mer
2119-2132
0.004
0
6mer
2185-2189
0.004
6
6mer
860-867
0.003
1
6mer
1902-1922
0.002
0
CTC-321K16.4
hsa-miR-299-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508452
Biotype: lincRNA
Gene id: ENSG00000251045
Gene Name: CTC-321K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-111
0.019
5
6mer
66-76
0.009
6
6mer
1701-1720
0.003
0
6mer
1130-1153
0.002
1
LOC340074
hsa-miR-299-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027127.1
Biotype: lincRNA
Gene id: NR_027127.1 (gene)
Gene Name: LOC340074
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-12
0.028
5
6mer
1602-1621
0.003
0
6mer
1031-1054
0.002
1
LINC01010
hsa-miR-299-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440090
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1392-1412
0.018
1
6mer
153-164
0.009
7
6mer
1313-1317
0.007
3
RP4-635E18.8
hsa-miR-299-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612387
Biotype: antisense
Gene id: ENSG00000271895
Gene Name: RP4-635E18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
617-639
0.034
7
HAND2-AS1
hsa-miR-299-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508534
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2077-2084
0.020
1
7mer
1929-1941
0.006
4
6mer
696-700
0.004
Not Conserved
6mer
304-325
0.004
6
RP11-541N10.3
hsa-miR-299-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568017
Biotype: sense_overlapping
Gene id: ENSG00000260461
Gene Name: RP11-541N10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1052-1076
0.018
1
6mer
214-231
0.011
5
6mer
608-625
0.004
5
LINC00893
hsa-miR-299-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000451969
Biotype: antisense
Gene id: ENSG00000241769
Gene Name: LINC00893
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-575
0.033
1
XLOC_008326
hsa-miR-299-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017590
Biotype: transcript isomorph
Gene id: XLOC_008326
Gene Name: XLOC_008326
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
501-518
0.033
0
RP11-327I22.5
hsa-miR-299-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000621949
Biotype: lincRNA
Gene id: ENSG00000278849
Gene Name: RP11-327I22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-328
0.033
0
XLOC_008708
hsa-miR-299-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018419
Biotype: transcript isomorph
Gene id: XLOC_008708
Gene Name: XLOC_008708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-363
0.018
0
7mer
943-954
0.010
1
6mer
899-915
0.005
1
RP11-708B6.2
hsa-miR-299-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532929
Biotype: antisense
Gene id: ENSG00000255028
Gene Name: RP11-708B6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-244
0.022
2
7mer
688-693
0.011
1
MEG3
hsa-miR-299-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-347
0.014
3
6mer
6802-6820
0.006
1
7mer
4312-4338
0.003
1
6mer
1333-1337
0.003
1
6mer
4170-4193
0.002
1
6mer
3234-3242
0.002
4
6mer
3939-3943
0.001
Not Conserved
6mer
4760-4783
0.001
1
CTD-2528L19.6
hsa-miR-299-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588040
Biotype: lincRNA
Gene id: ENSG00000267152
Gene Name: CTD-2528L19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-229
0.020
2
6mer
4-14
0.013
3
RP11-493L12.5
hsa-miR-299-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550019
Biotype: lincRNA
Gene id: ENSG00000257924
Gene Name: RP11-493L12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-363
0.033
2
RP11-352B15.2
hsa-miR-299-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
281-307
0.018
0
6mer
191-199
0.015
0
AP001628.7
hsa-miR-299-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420273
Biotype: lincRNA
Gene id: ENSG00000233754
Gene Name: AP001628.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-45
0.033
1
RP11-281J9.2
hsa-miR-299-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563114
Biotype: antisense
Gene id: ENSG00000261540
Gene Name: RP11-281J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-149
0.033
2
RP4-635E18.8
hsa-miR-299-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607145
Biotype: antisense
Gene id: ENSG00000271895
Gene Name: RP4-635E18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
836-858
0.033
7
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