LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
RP3-335N17.2
hsa-miR-299-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589278
Biotype: antisense
Gene id: ENSG00000228689
Gene Name: RP3-335N17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
576-593
0.029
0
6mer
143-166
0.006
1
OSBPL10-AS1
hsa-miR-299-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436598
Biotype: antisense
Gene id: ENSG00000232490
Gene Name: OSBPL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-477
0.030
0
6mer
130-134
0.005
3
RP11-3P22.2
hsa-miR-299-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435148
Biotype: lincRNA
Gene id: ENSG00000225718
Gene Name: RP11-3P22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-461
0.031
1
6mer
366-370
0.004
0
AC005550.3
hsa-miR-299-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451240
Biotype: antisense
Gene id: ENSG00000237070
Gene Name: AC005550.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2458-2474
0.031
2
6mer
1636-1659
0.002
1
6mer
1686-1697
0.001
3
RP11-488I20.9
hsa-miR-299-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562945
Biotype: lincRNA
Gene id: ENSG00000260073
Gene Name: RP11-488I20.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
676-697
0.021
1
7mer
2861-2881
0.013
0
CHODL-AS1
hsa-miR-299-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_024354.1
Biotype: lincRNA
Gene id: NR_024354.1 (gene)
Gene Name: CHODL-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-357
0.019
4
7mer
370-379
0.015
1
RP11-834C11.4
hsa-miR-299-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508564
Biotype: lincRNA
Gene id: ENSG00000250742
Gene Name: RP11-834C11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1329-1356
0.027
2
6mer
1113-1133
0.007
5
RP11-124G5.3
hsa-miR-299-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526978
Biotype: lincRNA
Gene id: ENSG00000255388
Gene Name: RP11-124G5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-756
0.034
1
RP11-671J11.7
hsa-miR-299-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623749
Biotype: lincRNA
Gene id: ENSG00000259002
Gene Name: RP11-671J11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-122
0.034
3
CTD-2330J20.2
hsa-miR-299-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559684
Biotype: antisense
Gene id: ENSG00000259285
Gene Name: CTD-2330J20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-527
0.032
1
6mer
16-35
0.002
1
XLOC_009849
hsa-miR-299-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020535
Biotype: transcript isomorph
Gene id: XLOC_009849
Gene Name: XLOC_009849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
490-502
0.034
7
LINC01239
hsa-miR-299-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436786
Biotype: lincRNA
Gene id: ENSG00000234840
Gene Name: LINC01239
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2222-2248
0.031
1
6mer
1008-1027
0.002
1
6mer
1146-1163
0.001
0
XLOC_013950
hsa-miR-299-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029027
Biotype: transcript isomorph
Gene id: XLOC_013950
Gene Name: XLOC_013950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-215
0.014
1
7mer
311-332
0.013
1
6mer
424-428
0.004
1
6mer
768-788
0.004
0
RP11-748C4.1
hsa-miR-299-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532735
Biotype: antisense
Gene id: ENSG00000254865
Gene Name: RP11-748C4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-228
0.027
0
6mer
322-326
0.007
1
XLOC_010012
hsa-miR-299-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020713
Biotype: transcript isomorph
Gene id: XLOC_010012
Gene Name: XLOC_010012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
178-201
0.021
1
6mer
442-460
0.013
1
LINC01031
hsa-miR-299-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420807
Biotype: lincRNA
Gene id: ENSG00000232077
Gene Name: LINC01031
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-109
0.034
1
FLJ22763
hsa-miR-299-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000619765
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-42
0.015
8
7mer
616-631
0.013
1
6mer
353-377
0.006
4
XLOC_005931
hsa-miR-299-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012366
Biotype: transcript isomorph
Gene id: XLOC_005931
Gene Name: XLOC_005931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-66
0.034
1
RP11-92G19.2
hsa-miR-299-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579141
Biotype: lincRNA
Gene id: ENSG00000265514
Gene Name: RP11-92G19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
476-491
0.025
3
6mer
448-469
0.009
4
NUTM2B-AS1
hsa-miR-299-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2136-2149
0.007
2
6mer
7503-7525
0.005
0
6mer
163-167
0.005
0
7mer
5708-5718
0.005
0
7mer
3972-3981
0.005
1
6mer
2522-2539
0.003
1
6mer
5236-5254
0.002
0
6mer
5901-5926
0.002
1
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