LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-298


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
COLCA1
hsa-miR-298
0.894
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000620864
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7482-7495
0.022
9
7mer
7887-7907
0.016
3
7mer
3635-3647
0.006
1
7mer
7014-7037
0.002
0
CTA-125H2.2
hsa-miR-298
0.893
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000594856
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-454
0.039
6
6mer
14-40
0.007
5
RP11-767I20.1
hsa-miR-298
0.893
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550678
Biotype: lincRNA
Gene id: ENSG00000257259
Gene Name: RP11-767I20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-111
0.022
Not Conserved
9mer
1849-1875
0.012
1
7mer
896-921
0.009
0
7mer
889-905
0.002
0
RP11-420A23.1
hsa-miR-298
0.893
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511497
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-360
0.014
2
8mer
1071-1088
0.012
2
7mer
628-650
0.008
3
8mer
1684-1697
0.006
Not Conserved
6mer
1518-1534
0.004
3
6mer
837-855
0.002
1
SRP54-AS1
hsa-miR-298
0.892
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556355
Biotype: antisense
Gene id: ENSG00000258704
Gene Name: SRP54-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-419
0.045
8
CTD-2020K17.1
hsa-miR-298
0.890
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591365
Biotype: antisense
Gene id: ENSG00000267121
Gene Name: CTD-2020K17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1813-1832
0.022
6
7mer
357-380
0.014
3
7mer
484-501
0.006
2
6mer
940-965
0.002
0
FAM95B1
hsa-miR-298
0.890
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610972
Biotype: lincRNA
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1082-1095
0.045
0
ATP13A4-AS1
hsa-miR-298
0.888
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000426459
Biotype: antisense
Gene id: ENSG00000225473
Gene Name: ATP13A4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-229
0.023
1
8mer
185-210
0.013
0
7mer
414-430
0.008
2
RP11-420B22.1
hsa-miR-298
0.887
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522670
Biotype: antisense
Gene id: ENSG00000253335
Gene Name: RP11-420B22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-39
0.041
1
6mer
344-358
0.004
0
RP11-760D2.5
hsa-miR-298
0.887
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429367
Biotype: lincRNA
Gene id: ENSG00000233288
Gene Name: RP11-760D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
637-662
0.028
0
7mer
2212-2235
0.010
Not Conserved
7mer
1738-1762
0.004
Not Conserved
6mer
1864-1889
0.002
Not Conserved
RP11-613F22.8
hsa-miR-298
0.887
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539313
Biotype: sense_intronic
Gene id: ENSG00000256588
Gene Name: RP11-613F22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-594
0.044
2
XLOC_006028
hsa-miR-298
0.887
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012984
Biotype: transcript isomorph
Gene id: XLOC_006028
Gene Name: XLOC_006028
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-432
0.028
5
7mer
666-679
0.017
2
RP11-552I14.1
hsa-miR-298
0.886
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550664
Biotype: lincRNA
Gene id: ENSG00000257860
Gene Name: RP11-552I14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-228
0.044
1
TMPO-AS1
hsa-miR-298
0.885
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027157.1
Biotype: antisense
Gene id: NR_027157.1 (gene)
Gene Name: TMPO-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-435
0.018
2
8mer
425-438
0.017
1
7mer
853-874
0.004
Not Conserved
7mer
863-881
0.003
1
6mer
944-966
0.002
0
CTD-3018O17.3
hsa-miR-298
0.885
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594119
Biotype: retained_intron
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-90
0.016
0
7mer
2583-2598
0.013
1
6mer
2511-2533
0.007
1
6mer
2545-2564
0.006
1
6mer
2262-2279
0.002
1
RP11-552I14.1
hsa-miR-298
0.885
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549568
Biotype: lincRNA
Gene id: ENSG00000257860
Gene Name: RP11-552I14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-286
0.044
1
RP11-18J9.3
hsa-miR-298
0.885
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547033
Biotype: lincRNA
Gene id: ENSG00000258178
Gene Name: RP11-18J9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-311
0.044
0
LINC00864
hsa-miR-298
0.885
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000447936
Biotype: lincRNA
Gene id: ENSG00000228055
Gene Name: LINC00864
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-446
0.033
1
6mer
431-454
0.006
1
6mer
11-32
0.005
0
RP11-563J2.2
hsa-miR-298
0.884
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000399868
Biotype: lincRNA
Gene id: ENSG00000215244
Gene Name: RP11-563J2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1280-1307
0.024
2
7mer
2257-2280
0.007
1
7mer
1295-1318
0.006
2
6mer
2993-3003
0.005
1
6mer
251-269
0.002
1
XLOC_001550
hsa-miR-298
0.884
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003752
Biotype: transcript isomorph
Gene id: XLOC_001550
Gene Name: XLOC_001550
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-84
0.044
2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept