LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
CTB-119C2.1
hsa-miR-298
0.900
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608362
Biotype: antisense
Gene id: ENSG00000273237
Gene Name: CTB-119C2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-656
0.021
1
7mer
924-941
0.017
1
7mer
1106-1122
0.007
1
6mer
523-531
0.003
1
XLOC_000651
hsa-miR-298
0.900
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001364
Biotype: transcript isomorph
Gene id: XLOC_000651
Gene Name: XLOC_000651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-159
0.047
0
RP11-1070N10.6
hsa-miR-298
0.899
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000488933
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3006-3031
0.023
1
7mer
696-722
0.010
1
7mer
2891-2916
0.010
3
6mer
243-268
0.002
1
6mer
2055-2081
0.001
1
ARMCX3-AS1
hsa-miR-298
0.898
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454228
Biotype: antisense
Gene id: ENSG00000228275
Gene Name: ARMCX3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-186
0.046
7
LLNLR-470E3.1
hsa-miR-298
0.898
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619715
Biotype: sense_intronic
Gene id: ENSG00000273837
Gene Name: LLNLR-470E3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-159
0.046
1
CTD-2006C1.2
hsa-miR-298
0.897
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-31
0.033
1
7mer
2534-2546
0.007
0
6mer
3414-3428
0.006
0
AC013460.1
hsa-miR-298
0.897
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450695
Biotype: lincRNA
Gene id: ENSG00000229727
Gene Name: AC013460.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-36
0.031
2
7mer
372-387
0.013
1
6mer
122-147
0.003
0
RP11-1070N10.6
hsa-miR-298
0.897
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000461160
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3461-3486
0.023
1
7mer
696-722
0.010
1
7mer
3346-3371
0.010
3
6mer
243-268
0.002
1
6mer
2510-2536
0.001
1
RP3-399L15.3
hsa-miR-298
0.897
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000519104
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-120
0.029
4
8mer
577-598
0.013
3
6mer
361-370
0.004
1
LINC00960
hsa-miR-298
0.897
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1760-1785
0.022
1
7mer
1273-1293
0.016
1
6mer
1470-1496
0.009
1
LINC00864
hsa-miR-298
0.897
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429129
Biotype: lincRNA
Gene id: ENSG00000228055
Gene Name: LINC00864
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-512
0.031
1
6mer
497-520
0.009
1
6mer
50-71
0.007
0
HNF1A-AS1
hsa-miR-298
0.896
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539163
Biotype: retained_intron
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
849-875
0.021
1
7mer
2221-2244
0.019
0
6mer
2042-2059
0.004
1
6mer
1396-1415
0.002
2
RP11-539I5.1
hsa-miR-298
0.896
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000453491
Biotype: antisense
Gene id: ENSG00000225302
Gene Name: RP11-539I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4811-4830
0.032
7
7mer
3735-3750
0.004
1
6mer
1439-1462
0.003
4
7mer
776-801
0.003
1
6mer
3977-3996
0.001
0
6mer
2179-2190
0.001
0
6mer
2694-2718
0.001
1
LINC01224
hsa-miR-298
0.895
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598922
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-544
0.026
1
7mer
90-111
0.012
0
6mer
31-45
0.007
0
XLOC_013093
hsa-miR-298
0.895
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027051
Biotype: transcript isomorph
Gene id: XLOC_013093
Gene Name: XLOC_013093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2622-2641
0.024
1
7mer
2088-2113
0.008
1
7mer
1771-1792
0.005
0
7mer
1806-1832
0.004
1
6mer
1520-1546
0.003
0
6mer
2225-2242
0.003
1
XLOC_003730
hsa-miR-298
0.895
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008287
Biotype: transcript isomorph
Gene id: XLOC_003730
Gene Name: XLOC_003730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
657-671
0.024
0
7mer
272-297
0.021
1
XLOC_003784
hsa-miR-298
0.895
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008937
Biotype: transcript isomorph
Gene id: XLOC_003784
Gene Name: XLOC_003784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-486
0.033
9
7mer
381-399
0.013
7
LINC01224
hsa-miR-298
0.894
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602077
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-573
0.026
1
7mer
145-166
0.013
0
6mer
86-100
0.007
0
RP11-277B15.3
hsa-miR-298
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606967
Biotype: lincRNA
Gene id: ENSG00000272205
Gene Name: RP11-277B15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-248
0.042
6
6mer
144-155
0.003
1
AP000640.2
hsa-miR-298
0.894
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534120
Biotype: lincRNA
Gene id: ENSG00000255355
Gene Name: AP000640.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-619
0.046
0
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