LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
LOC285762
hsa-miR-298
0.912
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_046100.1
Biotype: lincRNA
Gene id: NR_046100.1 (gene)
Gene Name: LOC285762
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2521-2543
0.043
3
7mer
1885-1899
0.004
1
6mer
1932-1957
0.002
1
AP000640.2
hsa-miR-298
0.911
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531276
Biotype: antisense
Gene id: ENSG00000255355
Gene Name: AP000640.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-426
0.049
0
FAM66C
hsa-miR-298
0.911
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544214
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1360-1372
0.025
1
7mer
1720-1744
0.012
0
7mer
1784-1810
0.012
1
XLOC_001274
hsa-miR-298
0.911
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000769
Biotype: transcript isomorph
Gene id: XLOC_001274
Gene Name: XLOC_001274
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-318
0.044
1
6mer
11-26
0.005
0
RP11-161I10.1
hsa-miR-298
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417409
Biotype: lincRNA
Gene id: ENSG00000241505
Gene Name: RP11-161I10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
468-492
0.049
4
AC013460.1
hsa-miR-298
0.911
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435062
Biotype: lincRNA
Gene id: ENSG00000229727
Gene Name: AC013460.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-63
0.025
2
7mer
227-252
0.014
Not Conserved
7mer
1488-1507
0.006
1
6mer
1050-1069
0.003
2
GCSAML-AS1
hsa-miR-298
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420469
Biotype: antisense
Gene id: ENSG00000227135
Gene Name: GCSAML-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1278-1297
0.049
2
RP11-1070N10.6
hsa-miR-298
0.911
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553913
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3102-3127
0.025
1
7mer
696-722
0.010
1
7mer
2987-3012
0.009
3
6mer
243-268
0.002
1
6mer
2055-2081
0.001
1
RP11-133K1.12
hsa-miR-298
0.909
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000622487
Biotype: sense_intronic
Gene id: ENSG00000273855
Gene Name: RP11-133K1.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-201
0.045
5
7mer
357-382
0.004
0
RP11-1070N10.6
hsa-miR-298
0.909
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000495847
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3394-3419
0.025
1
7mer
696-722
0.010
1
7mer
3279-3304
0.010
3
6mer
243-268
0.002
1
6mer
2443-2469
0.001
1
FAM95B1
hsa-miR-298
0.907
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610473
Biotype: lincRNA
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-420
0.048
0
RP11-397A16.3
hsa-miR-298
0.907
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-902
0.040
1
7mer
132-153
0.008
Not Conserved
XLOC_007197
hsa-miR-298
0.906
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015152
Biotype: transcript isomorph
Gene id: XLOC_007197
Gene Name: XLOC_007197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-234
0.029
1
8mer
213-234
0.014
1
6mer
240-256
0.005
1
RP11-563J2.2
hsa-miR-298
0.905
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_040079.1
Biotype: lincRNA
Gene id: NR_040079.1 (gene)
Gene Name: RP11-563J2.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1161-1188
0.028
2
7mer
2138-2161
0.007
1
7mer
1176-1199
0.006
2
6mer
2874-2884
0.005
1
6mer
132-150
0.002
1
MIR6818
hsa-miR-298
0.904
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23572-23591
0.007
1
8mer
37782-37804
0.004
3
8mer
29002-29026
0.004
1
7mer
27531-27549
0.004
0
7mer
37135-37152
0.004
1
8mer
15938-15964
0.003
1
6mer
19979-19994
0.002
4
6mer
10630-10648
0.002
1
6mer
26370-26379
0.002
4
6mer
27021-27036
0.002
0
6mer
4284-4301
0.002
2
6mer
42251-42277
0.002
4
7mer
14213-14240
0.002
1
6mer
34090-34109
0.001
2
6mer
29332-29345
0.001
1
7mer
4168-4182
0.001
2
6mer
5933-5950
0.001
0
6mer
45882-45906
0.001
0
6mer
27511-27536
0.001
1
RP11-1191J2.4
hsa-miR-298
0.903
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502923
Biotype: antisense
Gene id: ENSG00000248416
Gene Name: RP11-1191J2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
11-31
0.047
0
TTTY10
hsa-miR-298
0.902
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
851-872
0.019
0
6mer
1100-1115
0.015
0
7mer
1460-1478
0.013
Not Conserved
XLOC_006128
hsa-miR-298
0.901
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-305
0.014
0
7mer
1134-1154
0.012
0
6mer
1196-1218
0.007
0
9mer
974-997
0.006
Not Conserved
6mer
213-234
0.005
0
6mer
482-496
0.001
Not Conserved
AC024560.2
hsa-miR-298
0.901
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1332-1356
0.047
0
CTD-2231E14.5
hsa-miR-298
0.900
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587693
Biotype: lincRNA
Gene id: ENSG00000267373
Gene Name: CTD-2231E14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
96-112
0.035
1
7mer
102-129
0.011
1
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