LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-146I2.1
hsa-miR-298
0.925
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437648
Biotype: lincRNA
Gene id: ENSG00000234261
Gene Name: RP11-146I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-547
0.026
1
8mer
848-871
0.021
2
6mer
209-227
0.005
0
RP11-776H12.1
hsa-miR-298
0.923
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439156
Biotype: lincRNA
Gene id: ENSG00000226476
Gene Name: RP11-776H12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-470
0.035
1
7mer
1528-1546
0.006
0
8mer
176-198
0.006
0
7mer
1374-1399
0.005
1
XLOC_001621
hsa-miR-298
0.923
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
472-487
0.051
1
AC097721.2
hsa-miR-298
0.922
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414911
Biotype: lincRNA
Gene id: ENSG00000228043
Gene Name: AC097721.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-28
0.051
6
RP3-323A16.1
hsa-miR-298
0.921
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17943-17957
0.004
1
7mer
1150-1177
0.004
1
7mer
53244-53263
0.004
1
7mer
9380-9385
0.003
0
8mer
42345-42372
0.003
1
8mer
15256-15276
0.003
1
7mer
45138-45151
0.002
3
8mer
37382-37404
0.002
1
6mer
41280-41292
0.002
1
6mer
39319-39337
0.002
0
6mer
4796-4808
0.002
0
6mer
39557-39581
0.002
1
6mer
46368-46391
0.001
0
8mer
31529-31553
0.001
0
6mer
20705-20728
0.001
1
6mer
10289-10313
0.001
1
6mer
12182-12204
0.001
1
6mer
51926-51950
0.001
1
7mer
31484-31496
0.001
0
7mer
47215-47241
0.001
1
6mer
11107-11129
0.001
0
6mer
943-964
0.001
0
6mer
17032-17053
0.001
0
6mer
5555-5566
0.001
0
6mer
50432-50441
0.001
1
6mer
31410-31430
0.001
0
6mer
42494-42521
0.001
1
6mer
10437-10454
0.001
Not Conserved
6mer
47487-47512
0.001
1
6mer
47257-47282
0.001
1
6mer
31498-31516
0.000
1
XLOC_006763
hsa-miR-298
0.921
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014664
Biotype: transcript isomorph
Gene id: XLOC_006763
Gene Name: XLOC_006763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-96
0.025
0
8mer
803-822
0.022
0
6mer
763-781
0.004
1
XLOC_013531
hsa-miR-298
0.920
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028172
Biotype: transcript isomorph
Gene id: XLOC_013531
Gene Name: XLOC_013531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-62
0.024
1
7mer
4040-4065
0.009
1
6mer
1650-1663
0.004
3
6mer
4495-4520
0.003
0
6mer
1336-1356
0.003
1
6mer
3623-3647
0.003
2
6mer
2844-2865
0.002
1
9mer
1765-1789
0.002
0
7mer
2909-2935
0.002
1
XLOC_005507
hsa-miR-298
0.918
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011993
Biotype: transcript isomorph
Gene id: XLOC_005507
Gene Name: XLOC_005507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-58
0.027
1
7mer
170-192
0.023
1
RP11-372E1.4
hsa-miR-298
0.918
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476385
Biotype: antisense
Gene id: ENSG00000243818
Gene Name: RP11-372E1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1613-1639
0.035
0
8mer
962-983
0.013
1
6mer
1078-1096
0.003
1
AC116366.6
hsa-miR-298
0.917
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000443093
Biotype: antisense
Gene id: ENSG00000234290
Gene Name: AC116366.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
295-311
0.018
1
7mer
105-124
0.010
0
9mer
289-311
0.009
0
7mer
275-296
0.007
1
9mer
1606-1627
0.003
0
6mer
2077-2091
0.001
1
6mer
1181-1197
0.001
1
6mer
1578-1601
0.001
1
XLOC_004139
hsa-miR-298
0.916
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008635
Biotype: transcript isomorph
Gene id: XLOC_004139
Gene Name: XLOC_004139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-159
0.039
2
7mer
154-171
0.011
1
RP5-867C24.5
hsa-miR-298
0.916
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572193
Biotype: antisense
Gene id: ENSG00000261872
Gene Name: RP5-867C24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-212
0.035
9
7mer
162-172
0.015
6
LINC00240
hsa-miR-298
0.916
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606878
Biotype: lincRNA
Gene id: ENSG00000224843
Gene Name: LINC00240
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-740
0.050
Not Conserved
XLOC_002629
hsa-miR-298
0.915
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006002
Biotype: transcript isomorph
Gene id: XLOC_002629
Gene Name: XLOC_002629
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-175
0.026
5
7mer
317-341
0.023
3
RP5-821D11.7
hsa-miR-298
0.915
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000333487
Biotype: antisense
Gene id: ENSG00000184068
Gene Name: RP5-821D11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2905-2929
0.021
2
9mer
2896-2917
0.013
Not Conserved
8mer
1313-1339
0.008
0
8mer
2678-2692
0.008
1
C12orf36
hsa-miR-298
0.914
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000532841
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
946-967
0.030
0
7mer
582-597
0.015
0
6mer
643-656
0.004
1
RP11-705C15.3
hsa-miR-298
0.913
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537616
Biotype: sense_intronic
Gene id: ENSG00000257027
Gene Name: RP11-705C15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-315
0.046
1
7mer
1609-1629
0.003
0
LINC00388
hsa-miR-298
0.913
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000412714
Biotype: lincRNA
Gene id: ENSG00000229788
Gene Name: LINC00388
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-530
0.031
1
7mer
80-102
0.018
1
XLOC_010937
hsa-miR-298
0.912
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022636
Biotype: transcript isomorph
Gene id: XLOC_010937
Gene Name: XLOC_010937
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-287
0.049
5
RP11-168L7.3
hsa-miR-298
0.912
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555725
Biotype: lincRNA
Gene id: ENSG00000259082
Gene Name: RP11-168L7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-297
0.049
5
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