LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-1006G14.2
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565305
Biotype: lincRNA
Gene id: ENSG00000259783
Gene Name: RP11-1006G14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-307
0.025
0
RP11-563E2.2
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503478
Biotype: antisense
Gene id: ENSG00000250027
Gene Name: RP11-563E2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
681-695
0.018
3
6mer
692-713
0.007
1
XLOC_012568
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025757
Biotype: transcript isomorph
Gene id: XLOC_012568
Gene Name: XLOC_012568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3661-3688
0.011
0
7mer
684-703
0.006
1
6mer
4155-4176
0.003
1
7mer
3045-3072
0.002
2
6mer
2225-2239
0.001
3
6mer
1813-1827
0.001
1
FLJ37505
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614177
Biotype: lincRNA
Gene id: ENSG00000256597
Gene Name: FLJ37505
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1276-1300
0.011
1
8mer
1301-1328
0.007
1
6mer
283-309
0.006
5
HNRNPUL2-BSCL2
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-207
0.008
0
8mer
186-201
0.005
1
7mer
1196-1209
0.005
4
6mer
2908-2931
0.004
7
8mer
1888-1909
0.002
1
8mer+mismatch
203-226
0.001
1
RP11-1109M24.5
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578881
Biotype: lincRNA
Gene id: ENSG00000264956
Gene Name: RP11-1109M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1433-1455
0.025
0
LINC01506
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446290
Biotype: lincRNA
Gene id: ENSG00000234506
Gene Name: LINC01506
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-162
0.025
2
RP11-24I21.1
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503100
Biotype: lincRNA
Gene id: ENSG00000248210
Gene Name: RP11-24I21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2228-2246
0.023
1
6mer
1191-1218
0.002
2
XLOC_003384
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006752
Biotype: transcript isomorph
Gene id: XLOC_003384
Gene Name: XLOC_003384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2246-2262
0.012
1
7mer
472-485
0.006
0
7mer
2089-2108
0.005
0
6mer
2382-2407
0.002
0
LINC01378
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000422145
Biotype: lincRNA
Gene id: ENSG00000236922
Gene Name: LINC01378
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-77
0.015
1
7mer
2241-2261
0.010
1
XLOC_002245
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004366
Biotype: transcript isomorph
Gene id: XLOC_002245
Gene Name: XLOC_002245
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1960-1974
0.013
1
6mer
2060-2075
0.007
1
6mer
827-849
0.002
2
6mer
942-959
0.002
2
RP11-2O17.2
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505623
Biotype: antisense
Gene id: ENSG00000248529
Gene Name: RP11-2O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1175-1202
0.010
1
7mer
313-338
0.007
1
7mer
448-473
0.006
2
6mer
172-197
0.002
1
ZFAS1
hsa-miR-298
0.701
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000623640
Biotype: antisense
Gene id: ENSG00000177410
Gene Name: ZFAS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-354
0.017
2
7mer
501-528
0.008
1
RP11-30J20.1
hsa-miR-298
0.700
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521090
Biotype: lincRNA
Gene id: ENSG00000254101
Gene Name: RP11-30J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-575
0.025
0
MIR7515HG
hsa-miR-298
0.700
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590006
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-200
0.013
0
7mer
409-429
0.007
1
6mer
70-96
0.005
1
XLOC_009483
hsa-miR-298
0.700
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019682
Biotype: transcript isomorph
Gene id: XLOC_009483
Gene Name: XLOC_009483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3428-3447
0.025
1
RP5-893G23.1
hsa-miR-298
0.700
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441046
Biotype: lincRNA
Gene id: ENSG00000233372
Gene Name: RP5-893G23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-170
0.025
0
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