LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
AP001596.6
hsa-miR-298
0.704
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429340
Biotype: antisense
Gene id: ENSG00000232692
Gene Name: AP001596.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-301
0.017
2
7mer
159-178
0.008
1
CTD-3193O13.8
hsa-miR-298
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594308
Biotype: antisense
Gene id: ENSG00000269139
Gene Name: CTD-3193O13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-281
0.025
4
A1BG-AS1
hsa-miR-298
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595302
Biotype: antisense
Gene id: ENSG00000268895
Gene Name: A1BG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-619
0.018
0
6mer
2007-2028
0.004
1
9mer
1509-1536
0.004
1
AP000640.10
hsa-miR-298
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525337
Biotype: antisense
Gene id: ENSG00000254477
Gene Name: AP000640.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-253
0.015
3
6mer
301-314
0.005
3
9mer
464-486
0.005
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-298
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036570.1
Biotype: sense
Gene id: NR_036570.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1894-1917
0.011
0
8mer
1368-1394
0.009
4
6mer
2220-2243
0.002
3
6mer
2119-2135
0.002
1
6mer
1553-1572
0.000
0
6mer
1478-1499
0.000
1
RP11-378I13.1
hsa-miR-298
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425435
Biotype: antisense
Gene id: ENSG00000229913
Gene Name: RP11-378I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1351-1377
0.015
1
8mer
1540-1563
0.010
1
RP11-1090M7.1
hsa-miR-298
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584772
Biotype: antisense
Gene id: ENSG00000265489
Gene Name: RP11-1090M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3228-3254
0.009
4
6mer
528-544
0.006
10
6mer
176-199
0.004
1
6mer
919-944
0.004
3
7mer
1839-1861
0.002
0
XLOC_010706
hsa-miR-298
0.703
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021520
Biotype: transcript isomorph
Gene id: XLOC_010706
Gene Name: XLOC_010706
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
264-286
0.012
1
6mer
419-443
0.006
0
6mer
336-360
0.005
0
6mer
2369-2388
0.001
Not Conserved
RP11-517B11.7
hsa-miR-298
0.703
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000565095
Biotype: sense_overlapping
Gene id: ENSG00000261167
Gene Name: RP11-517B11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1232-1256
0.007
0
7mer
1792-1818
0.007
4
6mer
3111-3129
0.005
1
7mer
2008-2027
0.003
0
6mer
1446-1464
0.002
2
CTD-2574D22.4
hsa-miR-298
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567795
Biotype: sense_intronic
Gene id: ENSG00000260114
Gene Name: CTD-2574D22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1953-1965
0.011
1
7mer
934-956
0.008
0
6mer
1561-1582
0.003
0
6mer
1125-1139
0.003
1
XLOC_005617
hsa-miR-298
0.703
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012087
Biotype: transcript isomorph
Gene id: XLOC_005617
Gene Name: XLOC_005617
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-402
0.025
0
LINC01518
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000411439
Biotype: lincRNA
Gene id: ENSG00000233515
Gene Name: LINC01518
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-98
0.025
0
AC091633.3
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000426109
Biotype: antisense
Gene id: ENSG00000223711
Gene Name: AC091633.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-260
0.025
2
RP11-272B17.1
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547088
Biotype: lincRNA
Gene id: ENSG00000258214
Gene Name: RP11-272B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-100
0.025
1
FOXD3-AS1
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431294
Biotype: antisense
Gene id: ENSG00000230798
Gene Name: FOXD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-463
0.025
12
XLOC_013909
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028991
Biotype: transcript isomorph
Gene id: XLOC_013909
Gene Name: XLOC_013909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-63
0.025
0
XLOC_007101
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015024
Biotype: transcript isomorph
Gene id: XLOC_007101
Gene Name: XLOC_007101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-196
0.013
3
7mer
339-355
0.012
7
C1RL-AS1
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541775
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2263-2284
0.007
0
7mer
268-283
0.006
3
7mer
2952-2966
0.004
1
6mer
403-424
0.002
0
6mer
3409-3433
0.002
2
6mer
1901-1926
0.001
1
7mer
1707-1727
0.001
0
6mer
3214-3238
0.001
1
XLOC_007457
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016648
Biotype: transcript isomorph
Gene id: XLOC_007457
Gene Name: XLOC_007457
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
494-519
0.025
0
CTC-512J12.4
hsa-miR-298
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588655
Biotype: processed_transcript
Gene id: ENSG00000267188
Gene Name: CTC-512J12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-105
0.015
2
7mer
238-263
0.009
0
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