LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
XXbac-B476C20.9
hsa-miR-298
0.709
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426483
Biotype: antisense
Gene id: ENSG00000225335
Gene Name: XXbac-B476C20.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-699
0.017
2
6mer
493-515
0.005
5
6mer
466-488
0.003
1
RP11-532F6.5
hsa-miR-298
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607084
Biotype: lincRNA
Gene id: ENSG00000271911
Gene Name: RP11-532F6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
774-789
0.013
2
8mer
438-455
0.012
3
RP11-175O19.4
hsa-miR-298
0.709
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-436
0.018
6
6mer
2930-2940
0.007
4
RP11-234O6.2
hsa-miR-298
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508189
Biotype: antisense
Gene id: ENSG00000249568
Gene Name: RP11-234O6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-351
0.018
6
7mer
2487-2507
0.007
1
GJA9-MYCBP
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037635.1
Biotype: sense
Gene id: NR_037635.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1713-1733
0.021
4
6mer
2579-2595
0.004
3
CTA-331P3.1
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569685
Biotype: antisense
Gene id: ENSG00000260188
Gene Name: CTA-331P3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1402-1420
0.025
1
XLOC_013703
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
384-397
0.014
0
7mer
1628-1649
0.011
Not Conserved
PCAT19
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-277
0.017
0
6mer
1026-1046
0.004
Not Conserved
6mer
822-842
0.004
Not Conserved
ZNRF3-AS1
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000325660
Biotype: antisense
Gene id: ENSG00000177993
Gene Name: ZNRF3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-489
0.014
Not Conserved
7mer
1545-1565
0.009
0
6mer
1342-1355
0.002
Not Conserved
CTD-3049M7.1
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556447
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-180
0.018
1
7mer
180-207
0.007
1
XLOC_011137
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022883
Biotype: transcript isomorph
Gene id: XLOC_011137
Gene Name: XLOC_011137
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-109
0.020
0
7mer
349-363
0.005
0
6mer
1435-1459
0.001
0
AC005154.6
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584108
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-136
0.017
1
7mer
491-511
0.006
1
6mer
260-281
0.003
0
LINC00907
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585639
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-30
0.014
1
7mer
705-731
0.004
2
6mer
299-322
0.004
3
6mer
289-314
0.003
0
AP003774.1
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000447028
Biotype: antisense
Gene id: ENSG00000236935
Gene Name: AP003774.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-107
0.025
Not Conserved
CTC-529L17.1
hsa-miR-298
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512237
Biotype: lincRNA
Gene id: ENSG00000249169
Gene Name: CTC-529L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-111
0.025
2
PVRL3-AS1
hsa-miR-298
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491709
Biotype: antisense
Gene id: ENSG00000242242
Gene Name: PVRL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-482
0.021
2
6mer
471-488
0.004
0
KB-1517D11.4
hsa-miR-298
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000605923
Biotype: antisense
Gene id: ENSG00000272321
Gene Name: KB-1517D11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2357-2376
0.015
1
6mer
358-373
0.005
2
6mer
2357-2382
0.003
2
6mer
1139-1152
0.002
0
LIPE-AS1
hsa-miR-298
0.707
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594624
Biotype: antisense
Gene id: ENSG00000213904
Gene Name: LIPE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
77-97
0.018
0
8mer
1152-1166
0.007
2
PWRN1
hsa-miR-298
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569908
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1350-1359
0.025
1
RP11-347C18.3
hsa-miR-298
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519034
Biotype: sense_intronic
Gene id: ENSG00000253878
Gene Name: RP11-347C18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-181
0.025
2
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