LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-326K13.5
hsa-miR-298
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620744
Biotype: sense_intronic
Gene id: ENSG00000274275
Gene Name: RP11-326K13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-161
0.025
1
RP11-523O18.5
hsa-miR-298
0.712
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428825
Biotype: antisense
Gene id: ENSG00000233665
Gene Name: RP11-523O18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1158-1182
0.018
1
6mer
82-106
0.004
2
6mer
443-452
0.003
4
RP11-381O6.1
hsa-miR-298
0.712
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000615941
Biotype: sense_intronic
Gene id: ENSG00000276740
Gene Name: RP11-381O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-91
0.025
1
XLOC_007486
hsa-miR-298
0.712
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016660
Biotype: transcript isomorph
Gene id: XLOC_007486
Gene Name: XLOC_007486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2389-2415
0.008
3
7mer
1787-1811
0.006
1
6mer
1849-1871
0.005
7
7mer
640-664
0.003
0
6mer
182-201
0.003
1
RP11-215H22.1
hsa-miR-298
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561816
Biotype: lincRNA
Gene id: ENSG00000261340
Gene Name: RP11-215H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-330
0.015
0
6mer
663-680
0.006
4
6mer
2164-2190
0.004
1
LINC01224
hsa-miR-298
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601338
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-522
0.025
1
AC092652.1
hsa-miR-298
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413315
Biotype: antisense
Gene id: ENSG00000231758
Gene Name: AC092652.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-587
0.025
4
ZFPM2-AS1
hsa-miR-298
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518932
Biotype: antisense
Gene id: ENSG00000251003
Gene Name: ZFPM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-252
0.017
2
7mer
256-270
0.008
3
LINC00662
hsa-miR-298
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588150
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
379-403
0.025
0
LOC100506472
hsa-miR-298
0.711
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_040535.1
Biotype: sense
Gene id: NR_040535.1 (gene)
Gene Name: LOC100506472
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3474-3486
0.023
0
6mer
934-948
0.003
0
RP11-262H14.3
hsa-miR-298
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445604
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-175
0.025
0
RP11-324O2.3
hsa-miR-298
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000594870
Biotype: antisense
Gene id: ENSG00000232934
Gene Name: RP11-324O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-283
0.025
0
RP11-91J3.3
hsa-miR-298
0.710
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503677
Biotype: lincRNA
Gene id: ENSG00000250620
Gene Name: RP11-91J3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-215
0.021
8
6mer
101-128
0.004
3
MAGI2-AS3
hsa-miR-298
0.710
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452320
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1109
0.018
2
6mer
6054-6070
0.004
4
6mer
2226-2246
0.002
1
6mer
2625-2649
0.002
1
LINC01069
hsa-miR-298
0.710
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_108076.1
Biotype: lincRNA
Gene id: NR_108076.1 (gene)
Gene Name: LINC01069
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-326
0.011
1
7mer
252-272
0.008
1
7mer
1071-1087
0.004
1
6mer
1616-1640
0.002
1
RP5-856G1.2
hsa-miR-298
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000314040
Biotype: lincRNA
Gene id: ENSG00000176515
Gene Name: RP5-856G1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
198-217
0.024
2
6mer
1658-1684
0.001
2
LINC00319
hsa-miR-298
0.710
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000448049
Biotype: lincRNA
Gene id: ENSG00000188660
Gene Name: LINC00319
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3092-3110
0.013
0
8mer
2874-2891
0.006
0
6mer
255-271
0.003
0
7mer
1500-1517
0.003
0
6mer
2631-2652
0.001
0
LINC00426
hsa-miR-298
0.709
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000447147
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1295-1321
0.019
0
6mer
682-703
0.003
3
6mer
276-291
0.003
1
RP5-951N9.1
hsa-miR-298
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513082
Biotype: antisense
Gene id: ENSG00000249028
Gene Name: RP5-951N9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-100
0.019
1
6mer
58-82
0.007
2
XLOC_005277
hsa-miR-298
0.709
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011801
Biotype: transcript isomorph
Gene id: XLOC_005277
Gene Name: XLOC_005277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-522
0.025
3
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