LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
LINC01224
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594576
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-442
0.026
1
RP11-360L9.8
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000581909
Biotype: antisense
Gene id: ENSG00000264578
Gene Name: RP11-360L9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-161
0.014
1
7mer
168-186
0.011
8
RP1-90G24.6
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000452181
Biotype: lincRNA
Gene id: ENSG00000224050
Gene Name: RP1-90G24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-78
0.026
0
AC004870.3
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000455078
Biotype: lincRNA
Gene id: ENSG00000229192
Gene Name: AC004870.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-134
0.026
3
XLOC_001924
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005049
Biotype: transcript isomorph
Gene id: XLOC_001924
Gene Name: XLOC_001924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
502-514
0.026
1
HAND2-AS1
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3174-3194
0.013
1
6mer
518-534
0.007
6
6mer
2083-2106
0.004
0
6mer
1092-1113
0.002
1
CLRN1-AS1
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465576
Biotype: antisense
Gene id: ENSG00000239265
Gene Name: CLRN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
587-612
0.012
2
7mer
1572-1589
0.008
1
7mer
224-243
0.005
1
6mer
774-798
0.001
1
XLOC_010435
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021570
Biotype: transcript isomorph
Gene id: XLOC_010435
Gene Name: XLOC_010435
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-266
0.026
2
XLOC_012617
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026269
Biotype: transcript isomorph
Gene id: XLOC_012617
Gene Name: XLOC_012617
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
809-828
0.026
4
RP11-359E3.4
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608826
Biotype: antisense
Gene id: ENSG00000272631
Gene Name: RP11-359E3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-484
0.020
1
7mer
3786-3796
0.006
5
AE000661.37
hsa-miR-298
0.714
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000541008
Biotype: antisense
Gene id: ENSG00000251002
Gene Name: AE000661.37
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-26
0.026
4
RP11-363N22.3
hsa-miR-298
0.713
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000615314
Biotype: retained_intron
Gene id: ENSG00000205740
Gene Name: RP11-363N22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-541
0.022
1
6mer
2348-2362
0.003
0
CARS-AS1
hsa-miR-298
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499962
Biotype: antisense
Gene id: ENSG00000247473
Gene Name: CARS-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2118-2128
0.017
0
7mer
2229-2255
0.008
1
6mer
1083-1106
0.001
1
XLOC_008077
hsa-miR-298
0.713
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016941
Biotype: transcript isomorph
Gene id: XLOC_008077
Gene Name: XLOC_008077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1220-1239
0.012
1
7mer
468-491
0.010
1
7mer
1731-1757
0.005
2
RP11-4O1.2
hsa-miR-298
0.713
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563434
Biotype: sense_overlapping
Gene id: ENSG00000259953
Gene Name: RP11-4O1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
963-977
0.016
1
6mer
91-118
0.005
0
7mer
2083-2108
0.003
0
6mer
3139-3156
0.002
1
RP11-93B14.10
hsa-miR-298
0.713
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620143
Biotype: antisense
Gene id: ENSG00000276317
Gene Name: RP11-93B14.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-438
0.026
1
RP4-781K5.6
hsa-miR-298
0.713
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442382
Biotype: lincRNA
Gene id: ENSG00000230628
Gene Name: RP4-781K5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3513-3538
0.012
1
6mer
3445-3462
0.009
5
6mer
3530-3554
0.004
0
RP11-576E20.1
hsa-miR-298
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509964
Biotype: lincRNA
Gene id: ENSG00000250819
Gene Name: RP11-576E20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
714-738
0.015
2
7mer
743-766
0.011
4
LINC01277
hsa-miR-298
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419957
Biotype: lincRNA
Gene id: ENSG00000229017
Gene Name: LINC01277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
158-173
0.022
2
6mer
992-1014
0.004
3
LINC01089
hsa-miR-298
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000428029
Biotype: lincRNA
Gene id: ENSG00000212694
Gene Name: LINC01089
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
990-1006
0.021
11
6mer
304-326
0.002
2
6mer
362-379
0.002
2
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