LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
DIRC3
hsa-miR-298
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026597.1
Biotype: sense
Gene id: NR_026597.1 (gene)
Gene Name: DIRC3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3655-3681
0.019
0
7mer
1510-1537
0.005
0
6mer
2248-2270
0.002
3
CTC-265N9.1
hsa-miR-298
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523591
Biotype: antisense
Gene id: ENSG00000253591
Gene Name: CTC-265N9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1247-1272
0.026
0
LINC00837
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443246
Biotype: lincRNA
Gene id: ENSG00000235824
Gene Name: LINC00837
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3432-3455
0.014
0
8mer
1748-1771
0.004
1
6mer
3564-3588
0.003
0
6mer
2995-3022
0.002
0
7mer
2885-2905
0.002
0
6mer
1206-1224
0.001
1
AL133247.2
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435713
Biotype: antisense
Gene id: ENSG00000228563
Gene Name: AL133247.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-515
0.019
1
7mer
310-326
0.007
0
RP11-242O24.5
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450108
Biotype: antisense
Gene id: ENSG00000227637
Gene Name: RP11-242O24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-291
0.026
1
XLOC_011448
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-196
0.013
0
8mer
6760-6784
0.005
0
8mer
2111-2127
0.004
0
6mer
5662-5680
0.002
6
6mer
7477-7486
0.001
0
AC012594.1
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620227
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-507
0.019
6
6mer
26-49
0.006
3
RP11-653J6.1
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564269
Biotype: antisense
Gene id: ENSG00000261318
Gene Name: RP11-653J6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2-24
0.026
1
RP4-798P15.3
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000466953
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2556-2577
0.020
9
7mer
4807-4822
0.005
1
6mer
3530-3553
0.002
2
RP11-165F24.3
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590240
Biotype: antisense
Gene id: ENSG00000227155
Gene Name: RP11-165F24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-162
0.014
1
7mer
374-396
0.007
1
6mer
217-236
0.004
2
RP11-145P16.3
hsa-miR-298
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000605703
Biotype: sense_intronic
Gene id: ENSG00000270523
Gene Name: RP11-145P16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-245
0.026
1
LINC01450
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443406
Biotype: lincRNA
Gene id: ENSG00000232458
Gene Name: LINC01450
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-31
0.026
2
AC012594.1
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600489
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-362
0.026
2
LINC01185
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439412
Biotype: lincRNA
Gene id: ENSG00000228414
Gene Name: LINC01185
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-171
0.026
0
GS1-600G8.5
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412485
Biotype: lincRNA
Gene id: ENSG00000235385
Gene Name: GS1-600G8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
894-918
0.017
7
7mer
1460-1479
0.009
0
CBR3-AS1
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000453159
Biotype: antisense
Gene id: ENSG00000236830
Gene Name: CBR3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-373
0.026
0
AC012593.1
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592523
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
386-410
0.026
1
AC096772.6
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000343987
Biotype: lincRNA
Gene id: ENSG00000244567
Gene Name: AC096772.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-396
0.022
1
6mer
320-347
0.004
2
XLOC_003897
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007417
Biotype: transcript isomorph
Gene id: XLOC_003897
Gene Name: XLOC_003897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
713-737
0.015
2
7mer
742-765
0.011
4
XLOC_008489
hsa-miR-298
0.715
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018733
Biotype: transcript isomorph
Gene id: XLOC_008489
Gene Name: XLOC_008489
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1257-1272
0.016
4
7mer
91-118
0.010
5
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