LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-531A24.3
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000564832
Biotype: lincRNA
Gene id: ENSG00000260838
Gene Name: RP11-531A24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3126-3138
0.012
8
6mer
3052-3067
0.005
7
6mer
3018-3029
0.005
0
6mer
834-852
0.002
1
6mer
1264-1280
0.002
4
RP11-510C10.4
hsa-miR-298
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000565735
Biotype: lincRNA
Gene id: ENSG00000261213
Gene Name: RP11-510C10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-567
0.013
0
6mer
46-63
0.013
5
RP11-691G17.1
hsa-miR-298
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
672-697
0.026
0
RP11-547C5.2
hsa-miR-298
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551279
Biotype: lincRNA
Gene id: ENSG00000257373
Gene Name: RP11-547C5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-305
0.026
1
A2M-AS1
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_026971.1
Biotype: antisense
Gene id: NR_026971.1 (gene)
Gene Name: A2M-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
936-951
0.009
2
8mer
1325-1341
0.009
1
7mer
195-210
0.005
0
6mer
1188-1205
0.004
2
CTC-484P3.3
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513849
Biotype: antisense
Gene id: ENSG00000249175
Gene Name: CTC-484P3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1835-1861
0.024
1
6mer
773-795
0.002
0
PSMD5-AS1
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612398
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-219
0.026
1
AC090505.6
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423318
Biotype: lincRNA
Gene id: ENSG00000237222
Gene Name: AC090505.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
645-671
0.012
1
9mer
2744-2763
0.006
0
6mer
2951-2974
0.003
1
7mer
1944-1965
0.002
1
9mer
1286-1309
0.002
0
6mer
1248-1274
0.001
0
RP11-327P2.5
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456688
Biotype: antisense
Gene id: ENSG00000231856
Gene Name: RP11-327P2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-217
0.017
1
6mer
983-999
0.006
2
6mer
398-421
0.003
1
LINC01192
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000474168
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-56
0.026
Not Conserved
AC138430.4
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586064
Biotype: retained_intron
Gene id: ENSG00000267629
Gene Name: AC138430.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3481-3502
0.007
8
6mer
4849-4863
0.005
6
6mer
5117-5139
0.004
4
7mer
2656-2677
0.003
1
6mer
388-408
0.003
1
6mer
1042-1056
0.003
2
6mer
4474-4485
0.001
1
ZNRD1-AS1
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2239-2251
0.004
0
6mer
907-921
0.004
0
7mer
2479-2499
0.004
0
6mer
5599-5624
0.003
1
6mer
6591-6617
0.003
1
7mer
752-773
0.003
0
6mer
810-827
0.003
0
7mer
2453-2471
0.002
0
LINC00501
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425388
Biotype: lincRNA
Gene id: ENSG00000203645
Gene Name: LINC00501
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-289
0.014
1
7mer
1426-1450
0.008
2
6mer
1568-1595
0.004
2
RP11-711K1.8
hsa-miR-298
0.722
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612592
Biotype: lincRNA
Gene id: ENSG00000275119
Gene Name: RP11-711K1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
428-444
0.026
0
LINC01440
hsa-miR-298
0.721
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000610112
Biotype: lincRNA
Gene id: ENSG00000235166
Gene Name: LINC01440
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-642
0.026
0
LINC00506
hsa-miR-298
0.721
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
868-882
0.009
0
7mer
2929-2946
0.005
0
6mer
1057-1083
0.004
0
7mer
1294-1320
0.003
Not Conserved
7mer
3388-3406
0.002
0
6mer
3568-3594
0.001
Not Conserved
6mer
1344-1362
0.001
0
LINC01529
hsa-miR-298
0.721
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000433059
Biotype: lincRNA
Gene id: ENSG00000225872
Gene Name: LINC01529
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
886-902
0.020
4
7mer
265-276
0.004
0
8mer
1711-1728
0.002
Not Conserved
CCND2-AS2
hsa-miR-298
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537370
Biotype: antisense
Gene id: ENSG00000255920
Gene Name: CCND2-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
374-388
0.026
1
KC6
hsa-miR-298
0.721
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000600644
Biotype: lincRNA
Gene id: ENSG00000267313
Gene Name: KC6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2154-2176
0.022
Not Conserved
6mer
2024-2051
0.004
1
RP11-420A23.1
hsa-miR-298
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504984
Biotype: lincRNA
Gene id: ENSG00000251432
Gene Name: RP11-420A23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-245
0.015
2
7mer
513-535
0.011
3
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