LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
HAND2-AS1
hsa-miR-298
0.727
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3097-3117
0.013
1
6mer
441-457
0.008
6
6mer
2006-2029
0.003
0
6mer
1015-1036
0.002
1
RP11-114L10.2
hsa-miR-298
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438839
Biotype: antisense
Gene id: ENSG00000224970
Gene Name: RP11-114L10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-51
0.027
6
LINC00115
hsa-miR-298
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000473798
Biotype: lincRNA
Gene id: ENSG00000225880
Gene Name: LINC00115
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
87-109
0.015
1
8mer
759-774
0.009
0
6mer
1200-1227
0.002
0
KCTD21-AS1
hsa-miR-298
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000523626
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
508-527
0.018
9
6mer
464-488
0.009
8
NAMA
hsa-miR-298
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000605707
Biotype: lincRNA
Gene id: ENSG00000271086
Gene Name: NAMA
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-671
0.017
6
7mer
824-842
0.006
3
6mer
1477-1494
0.004
1
AC016644.1
hsa-miR-298
0.726
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000438553
Biotype: antisense
Gene id: ENSG00000235635
Gene Name: AC016644.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-431
0.027
3
XLOC_007033
hsa-miR-298
0.726
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014513
Biotype: transcript isomorph
Gene id: XLOC_007033
Gene Name: XLOC_007033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-45
0.021
4
6mer
653-667
0.005
0
7mer
3450-3474
0.001
Not Conserved
XLOC_005715
hsa-miR-298
0.726
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3207-3227
0.021
4
7mer
2261-2284
0.005
0
6mer
1837-1861
0.001
2
DLX6-AS1
hsa-miR-298
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000458352
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-569
0.023
1
6mer
327-346
0.004
1
XLOC_002890
hsa-miR-298
0.726
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006285
Biotype: transcript isomorph
Gene id: XLOC_002890
Gene Name: XLOC_002890
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-90
0.027
1
RP11-278C7.4
hsa-miR-298
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612009
Biotype: antisense
Gene id: ENSG00000276148
Gene Name: RP11-278C7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-124
0.027
1
XLOC_007725
hsa-miR-298
0.725
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016344
Biotype: transcript isomorph
Gene id: XLOC_007725
Gene Name: XLOC_007725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1508-1531
0.012
2
8mer
1696-1715
0.011
1
6mer
539-562
0.004
2
XLOC_004192
hsa-miR-298
0.725
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4017-4032
0.015
0
7mer
1698-1724
0.006
9
6mer
3218-3228
0.004
1
6mer
1175-1195
0.002
0
SNHG6
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520944
Biotype: lincRNA
Gene id: ENSG00000245910
Gene Name: SNHG6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-337
0.026
1
RP11-336A10.5
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425246
Biotype: lincRNA
Gene id: ENSG00000231483
Gene Name: RP11-336A10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-175
0.020
0
7mer
91-117
0.007
0
PROSER2-AS1
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445498
Biotype: antisense
Gene id: ENSG00000225778
Gene Name: PROSER2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-139
0.010
1
7mer
1059-1074
0.007
1
7mer
1952-1975
0.005
Not Conserved
6mer
382-395
0.002
0
6mer
2781-2795
0.002
0
6mer
1908-1928
0.001
4
RP11-783L4.1
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556291
Biotype: lincRNA
Gene id: ENSG00000258502
Gene Name: RP11-783L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-249
0.026
1
RP11-141M1.3
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445227
Biotype: lincRNA
Gene id: ENSG00000230490
Gene Name: RP11-141M1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-89
0.013
1
9mer
332-357
0.011
0
6mer
338-363
0.003
0
RP4-734C18.1
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000444792
Biotype: lincRNA
Gene id: ENSG00000230990
Gene Name: RP4-734C18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-731
0.024
0
6mer
276-294
0.002
Not Conserved
RP11-554D14.6
hsa-miR-298
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547452
Biotype: lincRNA
Gene id: ENSG00000257398
Gene Name: RP11-554D14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
26-46
0.012
0
6mer
501-512
0.008
0
6mer
462-481
0.007
0
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