LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
LINC01089
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541694
Biotype: lincRNA
Gene id: ENSG00000212694
Gene Name: LINC01089
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
831-847
0.021
11
6mer
51-73
0.003
2
6mer
109-126
0.003
2
CTB-113D17.1
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3430-3447
0.021
1
6mer
302-327
0.003
1
6mer
3330-3351
0.003
Not Conserved
LINC00907
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591381
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-34
0.014
1
6mer
140-163
0.005
3
7mer
752-776
0.005
0
6mer
130-155
0.004
0
AC009784.3
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454735
Biotype: lincRNA
Gene id: ENSG00000232053
Gene Name: AC009784.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-320
0.027
1
RP11-138B4.1
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511385
Biotype: lincRNA
Gene id: ENSG00000250658
Gene Name: RP11-138B4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2016-2037
0.017
1
7mer
1519-1540
0.010
0
GJA9-MYCBP
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037637.1
Biotype: sense
Gene id: NR_037637.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1713-1733
0.023
4
6mer
2447-2463
0.004
3
RP11-1036E20.9
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000399003
Biotype: lincRNA
Gene id: ENSG00000214797
Gene Name: RP11-1036E20.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-144
0.016
1
6mer
2534-2553
0.004
1
6mer
62-89
0.003
0
7mer
1000-1014
0.002
0
6mer
1051-1061
0.002
1
XLOC_001002
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001662
Biotype: transcript isomorph
Gene id: XLOC_001002
Gene Name: XLOC_001002
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-51
0.013
3
7mer
255-280
0.012
0
6mer
125-147
0.003
0
XLOC_003780
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008324
Biotype: transcript isomorph
Gene id: XLOC_003780
Gene Name: XLOC_003780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
417-440
0.027
2
LINC00892
hsa-miR-298
0.730
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000427517
Biotype: retained_intron
Gene id: ENSG00000233093
Gene Name: LINC00892
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1023-1042
0.012
1
7mer
271-294
0.010
1
7mer
1534-1560
0.005
2
AC005592.3
hsa-miR-298
0.729
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000566527
Biotype: lincRNA
Gene id: ENSG00000261757
Gene Name: AC005592.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
689-705
0.023
3
6mer
644-665
0.004
1
CTD-2329C7.2
hsa-miR-298
0.729
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589967
Biotype: lincRNA
Gene id: ENSG00000266985
Gene Name: CTD-2329C7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1376-1383
0.019
7
6mer
83-109
0.005
3
6mer
616-642
0.003
3
AC012594.1
hsa-miR-298
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608085
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-270
0.021
6
6mer
19-42
0.006
3
RMST
hsa-miR-298
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541282
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-621
0.016
Not Conserved
7mer
1258-1275
0.006
0
6mer
201-221
0.005
1
LINC00837
hsa-miR-298
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038376.1
Biotype: lincRNA
Gene id: NR_038376.1 (gene)
Gene Name: LINC00837
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3309-3332
0.014
0
8mer
1625-1648
0.004
1
6mer
3441-3465
0.003
0
6mer
2872-2899
0.003
0
7mer
2762-2782
0.002
0
6mer
1083-1101
0.001
1
XLOC_004640
hsa-miR-298
0.728
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010177
Biotype: transcript isomorph
Gene id: XLOC_004640
Gene Name: XLOC_004640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1014-1032
0.012
2
6mer
164-186
0.004
2
7mer
1588-1608
0.004
0
6mer
3989-4009
0.004
0
6mer
798-824
0.002
1
6mer
2280-2298
0.001
2
AC096670.3
hsa-miR-298
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000376593
Biotype: antisense
Gene id: ENSG00000204581
Gene Name: AC096670.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2751-2776
0.015
4
8mer
167-186
0.012
0
XLOC_010469
hsa-miR-298
0.728
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021501
Biotype: transcript isomorph
Gene id: XLOC_010469
Gene Name: XLOC_010469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-58
0.020
1
6mer
1056-1078
0.007
6
RP11-849H4.4
hsa-miR-298
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502284
Biotype: antisense
Gene id: ENSG00000251143
Gene Name: RP11-849H4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
99-110
0.010
9
8mer
1504-1530
0.007
4
7mer
576-603
0.005
4
6mer
262-288
0.004
5
RP11-5C23.1
hsa-miR-298
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608064
Biotype: antisense
Gene id: ENSG00000272760
Gene Name: RP11-5C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
862-875
0.027
2
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