LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-783L4.1
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556662
Biotype: lincRNA
Gene id: ENSG00000258502
Gene Name: RP11-783L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-249
0.027
1
CTD-2337A12.1
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513158
Biotype: antisense
Gene id: ENSG00000251314
Gene Name: CTD-2337A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-320
0.027
4
AC006296.1
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507932
Biotype: lincRNA
Gene id: ENSG00000251412
Gene Name: AC006296.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-43
0.021
0
6mer
578-590
0.004
1
6mer
436-453
0.003
1
RP11-419I17.1
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602979
Biotype: lincRNA
Gene id: ENSG00000270154
Gene Name: RP11-419I17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-69
0.027
1
XLOC_011185
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023184
Biotype: transcript isomorph
Gene id: XLOC_011185
Gene Name: XLOC_011185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4292-4313
0.013
3
7mer
2638-2661
0.010
4
6mer
1640-1664
0.004
3
6mer
2661-2680
0.000
Not Conserved
IPW
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_023915.1
Biotype: lincRNA
Gene id: NR_023915.1 (gene)
Gene Name: IPW
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4292-4313
0.013
3
7mer
2638-2661
0.010
4
6mer
1640-1664
0.004
3
6mer
2661-2680
0.000
Not Conserved
XLOC_005888
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012338
Biotype: transcript isomorph
Gene id: XLOC_005888
Gene Name: XLOC_005888
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
431-450
0.027
1
XLOC_008993
hsa-miR-298
0.732
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018642
Biotype: transcript isomorph
Gene id: XLOC_008993
Gene Name: XLOC_008993
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
762-787
0.013
1
7mer
123-148
0.007
0
6mer
359-381
0.004
2
6mer
1195-1206
0.003
1
XLOC_000173
hsa-miR-298
0.732
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000192
Biotype: transcript isomorph
Gene id: XLOC_000173
Gene Name: XLOC_000173
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-328
0.027
1
RP11-15B24.5
hsa-miR-298
0.732
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590791
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-563
0.019
0
7mer
536-558
0.008
0
LINC00366
hsa-miR-298
0.732
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000441430
Biotype: lincRNA
Gene id: ENSG00000229437
Gene Name: LINC00366
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-169
0.023
1
6mer
102-116
0.005
1
LOC643441
hsa-miR-298
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038846.1
Biotype: lincRNA
Gene id: NR_038846.1 (gene)
Gene Name: LOC643441
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1579-1605
0.019
1
7mer
1351-1368
0.008
3
CTD-2117L12.1
hsa-miR-298
0.732
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504333
Biotype: lincRNA
Gene id: ENSG00000250127
Gene Name: CTD-2117L12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1059-1084
0.013
1
7mer
791-805
0.007
5
6mer
1141-1159
0.005
Not Conserved
6mer
643-654
0.003
0
XLOC_012575
hsa-miR-298
0.732
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025765
Biotype: transcript isomorph
Gene id: XLOC_012575
Gene Name: XLOC_012575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-81
0.021
1
6mer
477-500
0.006
1
XLOC_012843
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026206
Biotype: transcript isomorph
Gene id: XLOC_012843
Gene Name: XLOC_012843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-485
0.016
1
6mer
133-144
0.007
2
7mer
618-642
0.004
0
RP11-473I1.6
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562893
Biotype: lincRNA
Gene id: ENSG00000261392
Gene Name: RP11-473I1.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-175
0.015
1
7mer
451-471
0.012
0
LINC00536
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505156
Biotype: lincRNA
Gene id: ENSG00000249917
Gene Name: LINC00536
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2570-2591
0.013
8
6mer
506-514
0.006
4
6mer
765-777
0.005
5
6mer
1453-1468
0.002
2
6mer
1054-1076
0.001
0
LINC01506
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000432148
Biotype: lincRNA
Gene id: ENSG00000234506
Gene Name: LINC01506
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-162
0.027
2
RP11-598F7.5
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540136
Biotype: antisense
Gene id: ENSG00000256694
Gene Name: RP11-598F7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
601-620
0.018
9
6mer
654-672
0.009
12
RP11-202D1.2
hsa-miR-298
0.731
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000565170
Biotype: lincRNA
Gene id: ENSG00000260433
Gene Name: RP11-202D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
461-486
0.016
1
6mer
134-145
0.007
2
7mer
619-643
0.004
0
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