LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
LOC388692
hsa-miR-298
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11424-11444
0.007
0
7mer
167-191
0.005
0
8mer
7690-7713
0.004
1
6mer
2330-2353
0.004
2
7mer
7261-7275
0.002
0
7mer
1840-1861
0.002
1
6mer
5156-5176
0.001
1
6mer
7044-7058
0.001
1
6mer
7840-7858
0.001
0
6mer
9356-9370
0.001
0
RNF144A-AS1
hsa-miR-298
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424351
Biotype: retained_intron
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1620-1644
0.013
1
7mer
2238-2256
0.008
1
6mer
2114-2128
0.004
1
6mer
1388-1404
0.002
2
AC008069.1
hsa-miR-298
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448650
Biotype: lincRNA
Gene id: ENSG00000223536
Gene Name: AC008069.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-48
0.028
1
XLOC_006978
hsa-miR-298
0.738
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014912
Biotype: transcript isomorph
Gene id: XLOC_006978
Gene Name: XLOC_006978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-209
0.019
1
7mer
123-144
0.009
1
XLOC_005243
hsa-miR-298
0.737
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011115
Biotype: transcript isomorph
Gene id: XLOC_005243
Gene Name: XLOC_005243
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4145-4167
0.009
0
8mer
1574-1588
0.007
0
8mer
134-148
0.005
1
6mer
5485-5502
0.003
0
6mer
5454-5481
0.002
0
6mer
3555-3576
0.002
0
RP11-94I2.4
hsa-miR-298
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614663
Biotype: lincRNA
Gene id: ENSG00000274372
Gene Name: RP11-94I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-387
0.023
0
6mer
457-482
0.005
Not Conserved
XLOC_008015
hsa-miR-298
0.737
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017433
Biotype: transcript isomorph
Gene id: XLOC_008015
Gene Name: XLOC_008015
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-256
0.028
1
LINC01228
hsa-miR-298
0.736
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567966
Biotype: lincRNA
Gene id: ENSG00000261082
Gene Name: LINC01228
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-569
0.028
4
AC012594.1
hsa-miR-298
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457834
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-464
0.027
2
XLOC_008528
hsa-miR-298
0.736
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3774-3790
0.021
0
7mer
2825-2841
0.006
1
XLOC_010585
hsa-miR-298
0.736
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021984
Biotype: transcript isomorph
Gene id: XLOC_010585
Gene Name: XLOC_010585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-364
0.009
4
7mer
2260-2274
0.008
1
8mer
1805-1829
0.006
1
6mer
2497-2523
0.004
2
6mer
2209-2229
0.001
3
AC012317.1
hsa-miR-298
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000414816
Biotype: lincRNA
Gene id: ENSG00000224310
Gene Name: AC012317.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2679-2704
0.012
0
8mer
2039-2066
0.008
Not Conserved
6mer
2478-2493
0.004
1
6mer
1773-1789
0.002
Not Conserved
6mer
2187-2205
0.001
1
GS1-251I9.2
hsa-miR-298
0.735
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519498
Biotype: antisense
Gene id: ENSG00000254219
Gene Name: GS1-251I9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-172
0.023
1
6mer
371-389
0.004
1
CTC-366B18.4
hsa-miR-298
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606908
Biotype: lincRNA
Gene id: ENSG00000272040
Gene Name: CTC-366B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-104
0.015
1
6mer
831-852
0.009
3
6mer
671-696
0.004
1
RP5-842K16.1
hsa-miR-298
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000461145
Biotype: lincRNA
Gene id: ENSG00000204990
Gene Name: RP5-842K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-885
0.018
0
6mer
1403-1427
0.009
5
UG0898H09
hsa-miR-298
0.735
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623646
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-119
0.008
0
9mer
1138-1163
0.004
1
6mer
3741-3751
0.003
4
6mer
3302-3323
0.003
6
6mer
419-439
0.003
1
6mer
373-398
0.003
1
6mer
105-127
0.002
0
6mer
4429-4447
0.002
1
XLOC_007644
hsa-miR-298
0.735
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016268
Biotype: transcript isomorph
Gene id: XLOC_007644
Gene Name: XLOC_007644
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1277-1300
0.012
1
7mer
1263-1281
0.007
1
6mer
1676-1697
0.004
1
6mer
1202-1215
0.003
1
AC104088.1
hsa-miR-298
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445613
Biotype: lincRNA
Gene id: ENSG00000232555
Gene Name: AC104088.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-195
0.023
1
6mer
53-64
0.005
Not Conserved
LINC00475
hsa-miR-298
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417983
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-313
0.027
0
RP5-971N18.3
hsa-miR-298
0.733
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457707
Biotype: antisense
Gene id: ENSG00000229766
Gene Name: RP5-971N18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1672-1699
0.022
1
6mer
1787-1801
0.006
1
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