LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
PSMD5-AS1
hsa-miR-298
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000611982
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-111
0.028
1
RP11-909B2.1
hsa-miR-298
0.742
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588074
Biotype: lincRNA
Gene id: ENSG00000266952
Gene Name: RP11-909B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1024-1044
0.015
4
7mer
688-712
0.010
3
6mer
986-1006
0.003
8
RP3-468B3.2
hsa-miR-298
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1399-1419
0.009
0
7mer
6081-6107
0.007
1
6mer
376-392
0.003
1
6mer
5672-5697
0.002
0
6mer
5929-5956
0.002
1
7mer
3301-3317
0.002
0
6mer
2817-2842
0.002
4
6mer
5293-5314
0.001
0
LINC00484
hsa-miR-298
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423719
Biotype: lincRNA
Gene id: ENSG00000235641
Gene Name: LINC00484
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2732-2758
0.008
2
8mer
298-318
0.007
1
6mer
765-787
0.007
4
6mer
183-206
0.005
1
6mer
2071-2088
0.001
0
XLOC_013272
hsa-miR-298
0.742
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1691-1708
0.015
Not Conserved
8mer
904-922
0.006
Not Conserved
7mer
973-990
0.004
Not Conserved
6mer
1115-1134
0.002
Not Conserved
RP11-333E1.1
hsa-miR-298
0.741
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_034082.1
Biotype: antisense
Gene id: NR_034082.1 (gene)
Gene Name: RP11-333E1.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1370-1392
0.020
1
7mer
135-157
0.007
0
6mer
892-916
0.002
0
LINC01049
hsa-miR-298
0.741
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000426840
Biotype: lincRNA
Gene id: ENSG00000234384
Gene Name: LINC01049
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-59
0.020
1
6mer
520-542
0.008
6
RP11-1018N14.2
hsa-miR-298
0.741
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000441895
Biotype: lincRNA
Gene id: ENSG00000225860
Gene Name: RP11-1018N14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2555-2575
0.018
1
7mer
2359-2381
0.010
2
AC002480.5
hsa-miR-298
0.741
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442252
Biotype: sense_overlapping
Gene id: ENSG00000225541
Gene Name: AC002480.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-316
0.024
4
9mer
376-396
0.004
1
RP11-333E1.1
hsa-miR-298
0.741
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571689
Biotype: antisense
Gene id: ENSG00000261879
Gene Name: RP11-333E1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1350-1372
0.019
1
7mer
115-137
0.007
0
6mer
872-896
0.002
0
RP11-324O2.3
hsa-miR-298
0.740
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449782
Biotype: antisense
Gene id: ENSG00000232934
Gene Name: RP11-324O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-581
0.028
0
RP11-1020M18.10
hsa-miR-298
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548135
Biotype: antisense
Gene id: ENSG00000257500
Gene Name: RP11-1020M18.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
215-237
0.019
1
7mer
488-512
0.009
6
RP11-48B3.4
hsa-miR-298
0.740
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569134
Biotype: lincRNA
Gene id: ENSG00000260317
Gene Name: RP11-48B3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-75
0.017
1
7mer
799-822
0.007
1
7mer
824-837
0.004
0
RP11-131K5.2
hsa-miR-298
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1833-1854
0.028
1
RP11-571I18.5
hsa-miR-298
0.739
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000595906
Biotype: antisense
Gene id: ENSG00000269506
Gene Name: RP11-571I18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1358-1380
0.028
1
MTHFS
hsa-miR-298
0.739
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567415
Biotype: lincRNA
Gene id: ENSG00000261229
Gene Name: MTHFS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-351
0.021
Not Conserved
8mer
452-474
0.007
0
RP11-783K16.10
hsa-miR-298
0.739
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539086
Biotype: processed_transcript
Gene id: ENSG00000257069
Gene Name: RP11-783K16.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
480-500
0.016
6
7mer
703-717
0.011
6
7mer
1341-1366
0.001
0
RP11-12K11.2
hsa-miR-298
0.738
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496403
Biotype: lincRNA
Gene id: ENSG00000240033
Gene Name: RP11-12K11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-651
0.028
0
MIR663AHG
hsa-miR-298
0.738
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000598448
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
15-31
0.014
2
7mer
317-338
0.014
0
CTD-2081C10.7
hsa-miR-298
0.738
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606482
Biotype: lincRNA
Gene id: ENSG00000272416
Gene Name: CTD-2081C10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-50
0.028
1
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