LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-506O24.1
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421530
Biotype: antisense
Gene id: ENSG00000233693
Gene Name: RP11-506O24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-209
0.021
4
6mer
1672-1680
0.007
4
CTC-400I9.3
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587702
Biotype: lincRNA
Gene id: ENSG00000267378
Gene Name: CTC-400I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-47
0.028
3
XLOC_005466
hsa-miR-298
0.746
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011192
Biotype: transcript isomorph
Gene id: XLOC_005466
Gene Name: XLOC_005466
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1773-1789
0.012
1
7mer
89-104
0.011
1
7mer
1537-1559
0.005
2
RP11-25H12.1
hsa-miR-298
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508572
Biotype: lincRNA
Gene id: ENSG00000249413
Gene Name: RP11-25H12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-568
0.015
1
7mer
368-394
0.007
0
6mer
690-717
0.006
1
RP11-783L4.1
hsa-miR-298
0.746
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557723
Biotype: lincRNA
Gene id: ENSG00000258502
Gene Name: RP11-783L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-249
0.028
1
XLOC_005208
hsa-miR-298
0.746
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011743
Biotype: transcript isomorph
Gene id: XLOC_005208
Gene Name: XLOC_005208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3608-3626
0.015
1
7mer
4283-4296
0.006
0
7mer
1941-1955
0.005
0
6mer
3490-3515
0.002
2
TNRC6C-AS1
hsa-miR-298
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_040071.1
Biotype: sense
Gene id: NR_040071.1 (gene)
Gene Name: TNRC6C-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1025-1051
0.020
1
6mer
2422-2446
0.002
1
6mer
543-566
0.002
1
6mer
557-574
0.002
1
6mer
627-654
0.001
0
6mer
904-921
0.001
0
RP1-14D6.7
hsa-miR-298
0.745
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000437309
Biotype: antisense
Gene id: ENSG00000231447
Gene Name: RP1-14D6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
84-107
0.020
1
7mer
404-425
0.008
0
TNRC6C-AS1
hsa-miR-298
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589217
Biotype: antisense
Gene id: ENSG00000204282
Gene Name: TNRC6C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1028-1054
0.020
1
6mer
2425-2449
0.002
1
6mer
546-569
0.002
1
6mer
560-577
0.002
1
6mer
630-657
0.001
0
6mer
907-924
0.001
0
CTC-359M8.1
hsa-miR-298
0.745
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511390
Biotype: antisense
Gene id: ENSG00000250025
Gene Name: CTC-359M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-182
0.016
3
7mer
225-250
0.013
0
RP11-268G12.1
hsa-miR-298
0.744
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000422048
Biotype: lincRNA
Gene id: ENSG00000228933
Gene Name: RP11-268G12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1802-1824
0.018
2
7mer
1715-1736
0.007
2
6mer
1397-1414
0.004
0
RNF219-AS1
hsa-miR-298
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607862
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5900-5921
0.014
1
6mer
281-298
0.007
2
7mer
2546-2572
0.003
0
6mer
2960-2986
0.002
3
6mer
2726-2753
0.002
3
CECR7
hsa-miR-298
0.744
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441006
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-469
0.008
0
7mer
2050-2070
0.007
1
8mer
548-574
0.005
0
6mer
1709-1736
0.005
1
6mer
2293-2308
0.003
1
AC018737.3
hsa-miR-298
0.744
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438722
Biotype: lincRNA
Gene id: ENSG00000224655
Gene Name: AC018737.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-469
0.028
0
XLOC_012865
hsa-miR-298
0.743
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026184
Biotype: transcript isomorph
Gene id: XLOC_012865
Gene Name: XLOC_012865
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1021-1041
0.015
4
7mer
685-709
0.010
3
6mer
983-1003
0.003
8
XLOC_001757
hsa-miR-298
0.743
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003942
Biotype: transcript isomorph
Gene id: XLOC_001757
Gene Name: XLOC_001757
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
411-432
0.018
1
6mer
1120-1131
0.006
3
6mer
262-273
0.004
Not Conserved
FLJ42627
hsa-miR-298
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024492.1
Biotype: lincRNA
Gene id: NR_024492.1 (gene)
Gene Name: FLJ42627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6834-6860
0.017
1
6mer
6860-6876
0.005
4
6mer
7027-7039
0.005
1
6mer
3052-3062
0.001
1
6mer
3623-3650
0.001
0
XLOC_010791
hsa-miR-298
0.743
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022460
Biotype: transcript isomorph
Gene id: XLOC_010791
Gene Name: XLOC_010791
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1082-1104
0.023
7
6mer
1415-1441
0.005
5
GS1-600G8.5
hsa-miR-298
0.743
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000443965
Biotype: lincRNA
Gene id: ENSG00000235385
Gene Name: GS1-600G8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
400-424
0.020
7
7mer
830-849
0.008
0
RP11-23J9.5
hsa-miR-298
0.742
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000375204
Biotype: processed_transcript
Gene id: ENSG00000254876
Gene Name: RP11-23J9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2551-2568
0.015
1
6mer
553-577
0.006
7
6mer
3003-3030
0.006
1
6mer
1606-1632
0.001
2
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