LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
CTA-941F9.10
hsa-miR-298
0.750
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10500-10525
0.005
2
7mer
7375-7397
0.005
1
7mer
20961-20984
0.004
0
9mer
8139-8163
0.004
0
7mer
2156-2173
0.003
0
6mer
20413-20428
0.002
1
6mer
7505-7527
0.002
0
6mer
10907-10925
0.001
1
6mer
13454-13466
0.001
1
6mer
13596-13611
0.001
0
6mer
9468-9492
0.001
0
LINC00326
hsa-miR-298
0.750
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000457339
Biotype: lincRNA
Gene id: ENSG00000231023
Gene Name: LINC00326
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-104
0.011
1
7mer
1773-1789
0.011
1
7mer
1537-1559
0.006
2
CASC7
hsa-miR-298
0.750
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2257-2282
0.016
6
7mer
6091-6111
0.005
1
7mer
8156-8164
0.004
5
6mer
5325-5351
0.001
3
6mer
7428-7446
0.001
1
6mer
6286-6309
0.001
0
RP11-434D9.2
hsa-miR-298
0.750
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514791
Biotype: lincRNA
Gene id: ENSG00000249894
Gene Name: RP11-434D9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-303
0.008
0
8mer
81-95
0.008
1
6mer
101-124
0.008
3
6mer
86-101
0.005
2
XLOC_013496
hsa-miR-298
0.750
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028138
Biotype: transcript isomorph
Gene id: XLOC_013496
Gene Name: XLOC_013496
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
384-399
0.007
0
6mer
212-237
0.007
3
6mer
90-113
0.006
2
6mer
279-292
0.005
1
6mer
894-920
0.004
1
AC012594.1
hsa-miR-298
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438635
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-533
0.029
2
XLOC_010254
hsa-miR-298
0.749
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020989
Biotype: transcript isomorph
Gene id: XLOC_010254
Gene Name: XLOC_010254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-297
0.029
3
RP11-53B2.1
hsa-miR-298
0.749
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624889
Biotype: TEC
Gene id: ENSG00000267529
Gene Name: RP11-53B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1019-1042
0.009
2
6mer
1648-1657
0.008
4
8mer
336-349
0.007
0
6mer
1342-1357
0.005
4
CTD-2358C21.4
hsa-miR-298
0.749
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569175
Biotype: antisense
Gene id: ENSG00000261731
Gene Name: CTD-2358C21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-58
0.029
0
LINC00654
hsa-miR-298
0.748
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015406.1
Biotype: lincRNA
Gene id: NR_015406.1 (gene)
Gene Name: LINC00654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1103-1126
0.011
1
9mer
708-730
0.005
0
7mer
571-596
0.005
Not Conserved
7mer
2994-3010
0.004
0
7mer
2681-2698
0.003
1
7mer
994-1009
0.002
Not Conserved
AC113331.9
hsa-miR-298
0.748
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000428160
Biotype: lincRNA
Gene id: ENSG00000236897
Gene Name: AC113331.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-148
0.029
0
XLOC_013049
hsa-miR-298
0.748
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027004
Biotype: transcript isomorph
Gene id: XLOC_013049
Gene Name: XLOC_013049
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-374
0.017
0
7mer
943-969
0.009
0
6mer
366-391
0.003
1
RP11-94I2.4
hsa-miR-298
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000617309
Biotype: lincRNA
Gene id: ENSG00000274372
Gene Name: RP11-94I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-332
0.023
0
6mer
402-427
0.005
Not Conserved
XLOC_012095
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025293
Biotype: transcript isomorph
Gene id: XLOC_012095
Gene Name: XLOC_012095
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
655-675
0.017
2
7mer
359-384
0.011
1
XLOC_009070
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019239
Biotype: transcript isomorph
Gene id: XLOC_009070
Gene Name: XLOC_009070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-33
0.028
1
RP1-140J1.1
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427145
Biotype: lincRNA
Gene id: ENSG00000229699
Gene Name: RP1-140J1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-35
0.021
1
6mer
359-376
0.004
1
8mer
1134-1159
0.004
1
RP11-781P6.1
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584722
Biotype: antisense
Gene id: ENSG00000265069
Gene Name: RP11-781P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1823-1840
0.011
1
8mer
982-1005
0.009
1
7mer
894-919
0.004
0
7mer
2145-2170
0.004
1
XLOC_005081
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010554
Biotype: transcript isomorph
Gene id: XLOC_005081
Gene Name: XLOC_005081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4134-4148
0.013
Not Conserved
7mer
1675-1701
0.007
4
8mer
3346-3371
0.005
0
6mer
3637-3661
0.003
1
RP11-373I8.1
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000474598
Biotype: lincRNA
Gene id: ENSG00000244382
Gene Name: RP11-373I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-16
0.025
1
7mer
112-138
0.003
1
CTD-2529O21.2
hsa-miR-298
0.747
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575404
Biotype: antisense
Gene id: ENSG00000261978
Gene Name: CTD-2529O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-250
0.028
1
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