LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-412H9.2
hsa-miR-298
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446002
Biotype: lincRNA
Gene id: ENSG00000225561
Gene Name: RP11-412H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-380
0.030
1
ARRDC3-AS1
hsa-miR-298
0.760
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027435.1
Biotype: antisense
Gene id: NR_027435.1 (gene)
Gene Name: ARRDC3-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
379-405
0.015
0
6mer
2489-2496
0.007
1
6mer
2002-2027
0.004
2
6mer
1818-1830
0.004
1
AC114765.2
hsa-miR-298
0.760
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438633
Biotype: lincRNA
Gene id: ENSG00000235337
Gene Name: AC114765.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-303
0.025
0
7mer
90-103
0.005
1
FAM182B
hsa-miR-298
0.760
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_026714.2
Biotype: sense
Gene id: NR_026714.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5142-5155
0.011
1
7mer
621-646
0.009
0
7mer
4516-4531
0.007
0
6mer
51-75
0.003
0
RP11-184M15.1
hsa-miR-298
0.760
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514265
Biotype: lincRNA
Gene id: ENSG00000248187
Gene Name: RP11-184M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1254-1271
0.030
4
RP11-679C8.2
hsa-miR-298
0.759
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503073
Biotype: antisense
Gene id: ENSG00000250938
Gene Name: RP11-679C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1652-1672
0.020
3
6mer
142-167
0.005
1
6mer
178-205
0.004
2
RP11-166D19.1
hsa-miR-298
0.758
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529823
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-577
0.010
2
8mer
2445-2467
0.008
0
6mer
3122-3145
0.008
6
6mer
784-807
0.003
1
CTD-2135D7.2
hsa-miR-298
0.758
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575137
Biotype: antisense
Gene id: ENSG00000262732
Gene Name: CTD-2135D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-627
0.016
1
8mer
798-811
0.009
1
6mer
3591-3615
0.003
6
6mer
3371-3396
0.002
1
RP11-1026M7.2
hsa-miR-298
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502515
Biotype: antisense
Gene id: ENSG00000249109
Gene Name: RP11-1026M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1192-1211
0.021
Not Conserved
7mer
946-970
0.008
Not Conserved
AGBL1-AS1
hsa-miR-298
0.758
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564487
Biotype: antisense
Gene id: ENSG00000260125
Gene Name: AGBL1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1567-1592
0.019
2
7mer
1259-1268
0.009
2
6mer
1135-1158
0.001
0
LINC00346
hsa-miR-298
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000538077
Biotype: lincRNA
Gene id: ENSG00000255874
Gene Name: LINC00346
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6173-6192
0.010
1
7mer
494-515
0.009
1
7mer
3596-3622
0.007
0
7mer
1424-1447
0.004
Not Conserved
RP1-102E24.8
hsa-miR-298
0.758
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541888
Biotype: lincRNA
Gene id: ENSG00000256433
Gene Name: RP1-102E24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-289
0.021
1
7mer
252-268
0.005
1
6mer
1051-1075
0.003
1
RP11-166D19.1
hsa-miR-298
0.758
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524376
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2441-2463
0.014
0
8mer
555-573
0.012
2
6mer
780-803
0.003
1
MIR22HG
hsa-miR-298
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574306
Biotype: lincRNA
Gene id: ENSG00000186594
Gene Name: MIR22HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-382
0.015
6
8mer
2006-2028
0.009
0
7mer
1269-1291
0.004
2
6mer
882-898
0.002
3
AC012594.1
hsa-miR-298
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609666
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-636
0.025
2
6mer
340-363
0.004
3
XLOC_008207
hsa-miR-298
0.757
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017361
Biotype: transcript isomorph
Gene id: XLOC_008207
Gene Name: XLOC_008207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-194
0.019
6
6mer
187-211
0.006
1
7mer
1905-1925
0.002
1
6mer
1798-1814
0.002
7
RP11-273G15.2
hsa-miR-298
0.756
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518024
Biotype: lincRNA
Gene id: ENSG00000247317
Gene Name: RP11-273G15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-807
0.029
1
RP11-496D24.2
hsa-miR-298
0.756
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569621
Biotype: lincRNA
Gene id: ENSG00000261121
Gene Name: RP11-496D24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-357
0.016
3
7mer
1812-1838
0.008
1
6mer
20-42
0.006
3
RP11-388P9.2
hsa-miR-298
0.756
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414383
Biotype: antisense
Gene id: ENSG00000232682
Gene Name: RP11-388P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-608
0.012
6
7mer
244-261
0.009
4
6mer
204-228
0.008
8
XLOC_006705
hsa-miR-298
0.756
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014604
Biotype: transcript isomorph
Gene id: XLOC_006705
Gene Name: XLOC_006705
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2147-2167
0.021
1
6mer
263-282
0.005
4
7mer
1191-1207
0.003
0
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