LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
AC007250.4
hsa-miR-298
0.971
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454367
Biotype: lincRNA
Gene id: ENSG00000225226
Gene Name: AC007250.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-610
0.042
5
7mer
787-810
0.022
4
6mer
440-456
0.004
1
NEAT1
hsa-miR-298
0.970
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20999-21024
0.009
1
7mer
8759-8784
0.009
0
8mer
18080-18103
0.008
0
8mer
15183-15209
0.005
0
7mer
11715-11735
0.005
0
7mer
20631-20656
0.005
1
7mer
20171-20196
0.005
0
7mer
18920-18930
0.004
2
7mer
4835-4857
0.002
0
6mer
7725-7749
0.002
1
6mer
17338-17361
0.002
1
7mer
12016-12042
0.002
0
7mer
21549-21565
0.002
1
6mer
12219-12237
0.001
1
6mer
11912-11936
0.001
3
6mer
16213-16229
0.001
0
6mer
20407-20426
0.001
0
6mer
6588-6608
0.001
0
6mer
3923-3936
0.001
0
7mer
11747-11766
0.001
0
6mer
6617-6641
0.000
1
6mer
20648-20662
0.000
2
LINC01224
hsa-miR-298
0.970
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593573
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-66
0.042
1
7mer
761-776
0.026
1
RP11-15H20.6
hsa-miR-298
0.968
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598323
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-210
0.066
1
XLOC_001363
hsa-miR-298
0.967
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003586
Biotype: transcript isomorph
Gene id: XLOC_001363
Gene Name: XLOC_001363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
988-1011
0.066
3
RP11-403B2.5
hsa-miR-298
0.967
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560839
Biotype: lincRNA
Gene id: ENSG00000259443
Gene Name: RP11-403B2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-565
0.038
0
7mer
973-995
0.028
0
LL22NC03-22D1.1
hsa-miR-298
0.966
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7169-7194
0.014
2
7mer
1936-1948
0.008
1
7mer
6747-6772
0.007
0
9mer
5453-5467
0.007
Not Conserved
7mer
16257-16279
0.006
1
7mer
24384-24398
0.004
0
7mer
17520-17544
0.004
4
7mer
4210-4230
0.004
0
6mer
8779-8801
0.002
1
6mer
12508-12533
0.002
1
6mer
18744-18758
0.002
2
7mer
16493-16511
0.001
1
6mer
947-960
0.001
0
6mer
25029-25048
0.001
1
6mer
26474-26486
0.001
1
6mer
10816-10833
0.001
0
XLOC_013275
hsa-miR-298
0.964
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027244
Biotype: transcript isomorph
Gene id: XLOC_013275
Gene Name: XLOC_013275
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-519
0.065
0
AC025171.1
hsa-miR-298
0.964
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399543
Biotype: retained_intron
Gene id: ENSG00000215068
Gene Name: AC025171.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2306-2330
0.052
1
6mer
755-778
0.007
1
6mer
578-591
0.003
0
6mer
1786-1808
0.002
0
RP11-552I14.1
hsa-miR-298
0.964
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547418
Biotype: lincRNA
Gene id: ENSG00000257860
Gene Name: RP11-552I14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
785-808
0.046
1
7mer
444-465
0.009
2
7mer
67-91
0.009
1
RP11-764K9.1
hsa-miR-298
0.962
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-463
0.056
0
6mer
954-977
0.007
0
AC010987.6
hsa-miR-298
0.962
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457448
Biotype: lincRNA
Gene id: ENSG00000237013
Gene Name: AC010987.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
691-708
0.063
4
XLOC_013274
hsa-miR-298
0.961
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2879-2902
0.027
1
7mer
5753-5770
0.015
0
6mer
4954-4969
0.006
1
6mer
3377-3397
0.006
1
6mer
4733-4756
0.004
1
7mer
3303-3325
0.003
0
6mer
2234-2260
0.002
0
RP11-15H20.6
hsa-miR-298
0.961
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601239
Biotype: retained_intron
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-220
0.021
1
6mer
2454-2469
0.016
1
6mer
2233-2256
0.010
1
6mer
877-897
0.009
1
7mer
803-825
0.007
0
LINC00663
hsa-miR-298
0.960
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586885
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-557
0.042
1
8mer
1617-1641
0.021
1
XLOC_013007
hsa-miR-298
0.959
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026949
Biotype: transcript isomorph
Gene id: XLOC_013007
Gene Name: XLOC_013007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-29
0.042
0
6mer
127-143
0.021
0
RP11-15H20.6
hsa-miR-298
0.959
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598599
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-172
0.062
1
XLOC_007710
hsa-miR-298
0.958
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-463
0.055
0
6mer
954-977
0.007
0
RP11-15H20.6
hsa-miR-298
0.958
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598053
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-193
0.062
1
RP11-15H20.6
hsa-miR-298
0.957
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596561
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-282
0.062
1
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