LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
PRR26
hsa-miR-298
0.765
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027152.2
Biotype: sense
Gene id: NR_027152.2 (gene)
Gene Name: PRR26
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2831-2836
0.027
1
6mer
2685-2711
0.003
1
CTC-281F24.1
hsa-miR-298
0.765
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576138
Biotype: lincRNA
Gene id: ENSG00000261996
Gene Name: CTC-281F24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-152
0.022
1
7mer
240-256
0.008
1
XLOC_009781
hsa-miR-298
0.765
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020448
Biotype: transcript isomorph
Gene id: XLOC_009781
Gene Name: XLOC_009781
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-519
0.030
5
XLOC_001781
hsa-miR-298
0.764
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003966
Biotype: transcript isomorph
Gene id: XLOC_001781
Gene Name: XLOC_001781
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1442-1463
0.015
1
7mer
1070-1094
0.014
0
RP11-826N14.2
hsa-miR-298
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512675
Biotype: antisense
Gene id: ENSG00000248469
Gene Name: RP11-826N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-326
0.021
Not Conserved
7mer
548-572
0.009
Not Conserved
ADAMTS9-AS2
hsa-miR-298
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460833
Biotype: antisense
Gene id: ENSG00000241684
Gene Name: ADAMTS9-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1710-1727
0.010
2
8mer
1089-1113
0.010
0
8mer
46-68
0.007
Not Conserved
6mer
915-940
0.004
4
RP11-166D19.1
hsa-miR-298
0.764
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-580
0.010
2
6mer
3146-3169
0.009
6
8mer
2448-2470
0.008
0
6mer
787-810
0.003
1
DAPK1-IT1
hsa-miR-298
0.764
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000431813
Biotype: sense_intronic
Gene id: ENSG00000236709
Gene Name: DAPK1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
588-600
0.030
3
XLOC_001856
hsa-miR-298
0.763
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004018
Biotype: transcript isomorph
Gene id: XLOC_001856
Gene Name: XLOC_001856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
282-307
0.017
8
7mer
876-898
0.013
1
CTD-2003C8.2
hsa-miR-298
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000503469
Biotype: lincRNA
Gene id: ENSG00000250041
Gene Name: CTD-2003C8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-282
0.030
3
TNRC6C-AS1
hsa-miR-298
0.763
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592939
Biotype: retained_intron
Gene id: ENSG00000204282
Gene Name: TNRC6C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2238-2264
0.026
1
6mer
2117-2134
0.001
0
6mer
1840-1867
0.001
0
6mer
1770-1787
0.001
1
6mer
1756-1779
0.001
1
XLOC_014147
hsa-miR-298
0.762
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029754
Biotype: transcript isomorph
Gene id: XLOC_014147
Gene Name: XLOC_014147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-201
0.030
Not Conserved
RP11-169K17.3
hsa-miR-298
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606330
Biotype: antisense
Gene id: ENSG00000272483
Gene Name: RP11-169K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-250
0.027
1
6mer
377-393
0.003
1
RP11-247A12.2
hsa-miR-298
0.762
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451229
Biotype: antisense
Gene id: ENSG00000204055
Gene Name: RP11-247A12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-182
0.019
0
7mer
205-224
0.011
2
CH507-42P11.6
hsa-miR-298
0.762
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623297
Biotype: lincRNA
Gene id: ENSG00000280179
Gene Name: CH507-42P11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2590-2608
0.014
0
7mer
644-659
0.008
2
8mer
2372-2389
0.005
0
7mer
1613-1630
0.002
0
DARS-AS1
hsa-miR-298
0.761
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595061
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
597-615
0.030
6
RP11-6O2.4
hsa-miR-298
0.761
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566974
Biotype: antisense
Gene id: ENSG00000261054
Gene Name: RP11-6O2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
167-182
0.014
1
7mer
1444-1462
0.006
5
8mer
1361-1383
0.005
1
6mer
610-621
0.004
3
6mer
1194-1212
0.002
2
XLOC_009855
hsa-miR-298
0.761
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020235
Biotype: transcript isomorph
Gene id: XLOC_009855
Gene Name: XLOC_009855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
970-997
0.016
1
7mer
111-129
0.014
0
XLOC_011939
hsa-miR-298
0.761
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024649
Biotype: transcript isomorph
Gene id: XLOC_011939
Gene Name: XLOC_011939
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-55
0.030
1
TMEM161B-AS1
hsa-miR-298
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508015
Biotype: antisense
Gene id: ENSG00000247828
Gene Name: TMEM161B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-94
0.025
11
6mer
167-181
0.005
1
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