LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-100N20.1
hsa-miR-298
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512502
Biotype: antisense
Gene id: ENSG00000251059
Gene Name: RP11-100N20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
671-695
0.017
1
7mer
51-73
0.014
2
AC012499.1
hsa-miR-298
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412133
Biotype: antisense
Gene id: ENSG00000229941
Gene Name: AC012499.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-694
0.030
4
RP11-362K2.2
hsa-miR-298
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548576
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-369
0.030
5
RP11-457K10.1
hsa-miR-298
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485384
Biotype: lincRNA
Gene id: ENSG00000242029
Gene Name: RP11-457K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-240
0.030
1
RP11-338C15.5
hsa-miR-298
0.769
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427949
Biotype: antisense
Gene id: ENSG00000235862
Gene Name: RP11-338C15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-181
0.027
1
8mer
1479-1493
0.002
Not Conserved
6mer
1484-1511
0.002
Not Conserved
CTD-2015A6.2
hsa-miR-298
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510845
Biotype: lincRNA
Gene id: ENSG00000248870
Gene Name: CTD-2015A6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-399
0.030
5
CTD-2184D3.6
hsa-miR-298
0.768
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559825
Biotype: lincRNA
Gene id: ENSG00000259327
Gene Name: CTD-2184D3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-206
0.025
1
6mer
131-150
0.006
1
RP11-544I20.2
hsa-miR-298
0.768
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555861
Biotype: antisense
Gene id: ENSG00000214770
Gene Name: RP11-544I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1400-1425
0.012
0
7mer
904-929
0.008
0
7mer
1148-1170
0.008
0
6mer
1129-1155
0.003
0
AC004066.3
hsa-miR-298
0.768
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514879
Biotype: antisense
Gene id: ENSG00000250522
Gene Name: AC004066.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-81
0.014
1
7mer
156-175
0.012
4
6mer
518-538
0.004
2
RP3-399L15.3
hsa-miR-298
0.768
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000519270
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-274
0.017
2
7mer
1152-1166
0.014
1
RP11-500G22.5
hsa-miR-298
0.767
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000620490
Biotype: antisense
Gene id: ENSG00000273891
Gene Name: RP11-500G22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1907-1932
0.019
8
7mer
1358-1384
0.009
1
6mer
88-114
0.002
2
AC140542.2
hsa-miR-298
0.767
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570024
Biotype: lincRNA
Gene id: ENSG00000261325
Gene Name: AC140542.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
981-996
0.030
7
XLOC_006753
hsa-miR-298
0.767
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5880-5905
0.011
9
7mer
225-245
0.005
1
6mer
5490-5515
0.003
10
8mer
1397-1423
0.003
1
6mer
4054-4071
0.002
7
6mer
4205-4222
0.001
5
6mer
2611-2632
0.001
2
6mer
4434-4452
0.001
3
6mer
2254-2280
0.001
1
RP11-718G2.5
hsa-miR-298
0.767
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553791
Biotype: lincRNA
Gene id: ENSG00000259033
Gene Name: RP11-718G2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-182
0.030
1
XLOC_007841
hsa-miR-298
0.767
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016472
Biotype: transcript isomorph
Gene id: XLOC_007841
Gene Name: XLOC_007841
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-19
0.030
5
PAXIP1-AS2
hsa-miR-298
0.767
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024476.1
Biotype: antisense
Gene id: NR_024476.1 (gene)
Gene Name: PAXIP1-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1386-1401
0.015
3
7mer
1414-1430
0.010
8
7mer
1129-1144
0.005
1
RP11-16N11.2
hsa-miR-298
0.766
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566372
Biotype: antisense
Gene id: ENSG00000260572
Gene Name: RP11-16N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-201
0.015
0
7mer
809-824
0.007
1
7mer
940-958
0.006
2
6mer
1025-1045
0.002
1
RP11-384P7.5
hsa-miR-298
0.766
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449144
Biotype: lincRNA
Gene id: ENSG00000227301
Gene Name: RP11-384P7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
942-958
0.030
1
RP11-109I13.2
hsa-miR-298
0.765
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601195
Biotype: retained_intron
Gene id: ENSG00000235020
Gene Name: RP11-109I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-760
0.030
5
RP11-820I16.3
hsa-miR-298
0.765
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592820
Biotype: antisense
Gene id: ENSG00000266955
Gene Name: RP11-820I16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-86
0.020
0
8mer
489-508
0.006
1
6mer
399-412
0.004
1
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