LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-395G23.3
hsa-miR-298
0.774
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521369
Biotype: lincRNA
Gene id: ENSG00000254615
Gene Name: RP11-395G23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1161-1188
0.026
1
6mer
1269-1283
0.005
1
CTD-2260A17.2
hsa-miR-298
0.773
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501338
Biotype: antisense
Gene id: ENSG00000247121
Gene Name: CTD-2260A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-841
0.023
1
6mer
335-356
0.004
1
8mer
106-129
0.004
0
XIST
hsa-miR-298
0.773
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
313-335
0.006
3
6mer
275-292
0.004
1
7mer
2502-2522
0.004
2
7mer
6919-6938
0.004
6
6mer
18689-18705
0.003
Not Conserved
6mer
3430-3455
0.003
4
6mer
2074-2099
0.002
1
6mer
1232-1255
0.002
0
6mer
15455-15474
0.002
0
6mer
6884-6897
0.001
0
6mer
6871-6894
0.001
2
RP11-674E16.4
hsa-miR-298
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000399242
Biotype: sense_intronic
Gene id: ENSG00000214919
Gene Name: RP11-674E16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1468-1485
0.023
4
7mer
435-452
0.008
5
MIR4534
hsa-miR-298
0.772
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9550-9565
0.005
2
8mer
23163-23183
0.004
1
7mer
42607-42626
0.003
1
7mer
19202-19218
0.002
1
6mer
43128-43152
0.002
1
6mer
45897-45913
0.002
0
6mer
3392-3416
0.001
0
6mer
39583-39604
0.001
1
6mer
39222-39236
0.001
2
6mer
38791-38815
0.001
0
6mer
1425-1447
0.001
1
6mer
3258-3272
0.001
2
6mer
4765-4784
0.001
1
6mer
44521-44539
0.001
1
6mer
9786-9809
0.001
1
6mer
23457-23467
0.001
2
7mer
18516-18541
0.001
0
7mer
8786-8802
0.001
1
6mer
36700-36713
0.001
1
6mer
44403-44419
0.001
1
LINC01287
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454441
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-239
0.022
1
6mer
775-799
0.009
1
XLOC_012193
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025171
Biotype: transcript isomorph
Gene id: XLOC_012193
Gene Name: XLOC_012193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1029-1049
0.031
2
TAPT1-AS1
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000573308
Biotype: antisense
Gene id: ENSG00000263327
Gene Name: TAPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-394
0.025
4
6mer
819-839
0.006
1
LINC01193
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553416
Biotype: lincRNA
Gene id: ENSG00000258710
Gene Name: LINC01193
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3312-3335
0.014
0
7mer
15-34
0.008
Not Conserved
7mer
2487-2509
0.007
0
6mer
1318-1332
0.002
0
6mer
2489-2515
0.001
0
RP11-39E3.3
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504737
Biotype: antisense
Gene id: ENSG00000250592
Gene Name: RP11-39E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-59
0.031
0
XLOC_003697
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008258
Biotype: transcript isomorph
Gene id: XLOC_003697
Gene Name: XLOC_003697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-251
0.026
1
7mer
299-316
0.005
0
AC016907.3
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455424
Biotype: antisense
Gene id: ENSG00000233862
Gene Name: AC016907.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-355
0.022
3
7mer
2850-2870
0.007
0
6mer
2276-2294
0.001
0
FLJ46906
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447494
Biotype: antisense
Gene id: ENSG00000225177
Gene Name: FLJ46906
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-63
0.029
1
6mer
600-620
0.002
1
CTD-2292P10.4
hsa-miR-298
0.771
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520572
Biotype: antisense
Gene id: ENSG00000253741
Gene Name: CTD-2292P10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-658
0.007
1
9mer
5530-5549
0.007
1
7mer
2994-3021
0.006
1
7mer
1678-1703
0.005
1
6mer
4717-4735
0.003
2
6mer
4131-4154
0.002
1
XLOC_006513
hsa-miR-298
0.770
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013877
Biotype: transcript isomorph
Gene id: XLOC_006513
Gene Name: XLOC_006513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-183
0.028
0
6mer
484-502
0.003
Not Conserved
XLOC_007135
hsa-miR-298
0.770
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014559
Biotype: transcript isomorph
Gene id: XLOC_007135
Gene Name: XLOC_007135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1830-1857
0.016
1
7mer
562-586
0.015
0
XLOC_009087
hsa-miR-298
0.770
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019257
Biotype: transcript isomorph
Gene id: XLOC_009087
Gene Name: XLOC_009087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43-68
0.030
2
AC004158.2
hsa-miR-298
0.770
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561611
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-386
0.017
10
8mer
912-934
0.009
8
6mer
1052-1075
0.004
7
XLOC_004398
hsa-miR-298
0.770
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009973
Biotype: transcript isomorph
Gene id: XLOC_004398
Gene Name: XLOC_004398
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1148-1172
0.011
0
7mer
968-992
0.009
1
7mer
2125-2149
0.006
1
9mer
10-34
0.005
Not Conserved
XLOC_009606
hsa-miR-298
0.770
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019806
Biotype: transcript isomorph
Gene id: XLOC_009606
Gene Name: XLOC_009606
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-261
0.017
0
8mer
207-220
0.013
1
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