LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
LINC01490
hsa-miR-298
0.777
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551399
Biotype: lincRNA
Gene id: ENSG00000257741
Gene Name: LINC01490
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1200-1215
0.013
1
7mer
187-207
0.010
0
6mer
840-859
0.008
4
FAM41C
hsa-miR-298
0.777
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427857
Biotype: lincRNA
Gene id: ENSG00000230368
Gene Name: FAM41C
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-78
0.019
0
7mer
190-200
0.012
0
XLOC_011447
hsa-miR-298
0.777
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023647
Biotype: transcript isomorph
Gene id: XLOC_011447
Gene Name: XLOC_011447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
871-886
0.021
0
6mer
583-595
0.006
1
6mer
187-203
0.005
0
AC073043.1
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454153
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-33
0.031
1
XLOC_013964
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028852
Biotype: transcript isomorph
Gene id: XLOC_013964
Gene Name: XLOC_013964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3807-3825
0.014
0
8mer
3589-3606
0.006
0
7mer
1246-1261
0.005
2
6mer
255-271
0.003
0
7mer
2215-2232
0.002
0
6mer
3346-3367
0.001
0
RP11-556O5.6
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000594215
Biotype: lincRNA
Gene id: ENSG00000268955
Gene Name: RP11-556O5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-613
0.031
1
AE000661.37
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000545670
Biotype: antisense
Gene id: ENSG00000251002
Gene Name: AE000661.37
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-139
0.016
1
7mer
127-150
0.015
3
AP000662.4
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530595
Biotype: sense_overlapping
Gene id: ENSG00000254602
Gene Name: AP000662.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2030-2045
0.025
1
7mer
631-652
0.004
0
6mer
1018-1029
0.002
0
RP4-798P15.3
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000354921
Biotype: processed_transcript
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2556-2577
0.020
9
8mer
4860-4882
0.011
0
XLOC_010135
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020850
Biotype: transcript isomorph
Gene id: XLOC_010135
Gene Name: XLOC_010135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
717-737
0.013
4
7mer
266-283
0.011
Not Conserved
7mer
469-491
0.007
0
XLOC_000036
hsa-miR-298
0.776
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001929
Biotype: transcript isomorph
Gene id: XLOC_000036
Gene Name: XLOC_000036
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
787-806
0.028
Not Conserved
7mer
527-546
0.003
1
AC003958.2
hsa-miR-298
0.775
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000430006
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1362-1389
0.024
0
7mer
1015-1036
0.007
1
RP6-24A23.7
hsa-miR-298
0.775
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-217
0.018
6
6mer
210-234
0.006
1
6mer
2609-2634
0.002
1
7mer
1928-1948
0.002
1
6mer
1821-1837
0.002
7
PVRL3-AS1
hsa-miR-298
0.775
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467426
Biotype: antisense
Gene id: ENSG00000242242
Gene Name: PVRL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-90
0.027
2
6mer
79-96
0.004
0
RP11-669B22.1
hsa-miR-298
0.775
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517967
Biotype: sense_intronic
Gene id: ENSG00000253222
Gene Name: RP11-669B22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-425
0.025
2
6mer
52-63
0.006
0
XLOC_012763
hsa-miR-298
0.774
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026418
Biotype: transcript isomorph
Gene id: XLOC_012763
Gene Name: XLOC_012763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
659-686
0.015
1
8mer
793-806
0.009
Not Conserved
7mer
541-566
0.007
0
AC012594.1
hsa-miR-298
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610954
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-603
0.026
2
6mer
26-49
0.005
3
SNHG14
hsa-miR-298
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7638-7659
0.013
3
7mer
5984-6007
0.010
4
6mer
4986-5010
0.004
3
6mer
2953-2965
0.002
1
6mer
551-569
0.001
0
6mer
6007-6026
0.000
Not Conserved
LINC00319
hsa-miR-298
0.774
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000342757
Biotype: lincRNA
Gene id: ENSG00000188660
Gene Name: LINC00319
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2589-2607
0.015
0
7mer
643-658
0.008
2
8mer
2371-2388
0.006
0
7mer
1612-1629
0.002
0
AC074183.4
hsa-miR-298
0.774
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439105
Biotype: lincRNA
Gene id: ENSG00000232019
Gene Name: AC074183.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
161-180
0.029
0
6mer
481-499
0.002
Not Conserved
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