LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-783L4.1
hsa-miR-298
0.781
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554187
Biotype: lincRNA
Gene id: ENSG00000258502
Gene Name: RP11-783L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-523
0.032
1
XLOC_013266
hsa-miR-298
0.781
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027228
Biotype: transcript isomorph
Gene id: XLOC_013266
Gene Name: XLOC_013266
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1240-1257
0.011
Not Conserved
8mer
459-477
0.011
Not Conserved
7mer
525-542
0.004
Not Conserved
6mer
1488-1506
0.003
Not Conserved
6mer
667-686
0.003
Not Conserved
C12orf36
hsa-miR-298
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000531049
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-647
0.031
0
LINC00894
hsa-miR-298
0.781
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000425602
Biotype: antisense
Gene id: ENSG00000235703
Gene Name: LINC00894
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1317-1336
0.017
1
7mer
1528-1542
0.011
0
6mer
922-947
0.004
1
C1orf132
hsa-miR-298
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13759-13776
0.007
0
7mer
9559-9576
0.004
1
6mer
6632-6654
0.003
7
7mer
13367-13387
0.003
0
7mer
3919-3946
0.003
1
9mer
8793-8818
0.003
0
6mer
527-539
0.002
1
6mer
1617-1629
0.002
2
7mer
10994-11020
0.002
Not Conserved
6mer
8581-8603
0.001
0
6mer
10535-10557
0.001
2
6mer
9504-9525
0.001
1
RP11-656D10.6
hsa-miR-298
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437060
Biotype: antisense
Gene id: ENSG00000238186
Gene Name: RP11-656D10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-430
0.031
2
CTA-544A11.1
hsa-miR-298
0.781
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1224-1241
0.006
0
7mer
4041-4062
0.005
1
6mer
1990-2009
0.004
6
7mer
6005-6028
0.004
1
6mer
9875-9897
0.002
4
6mer
2679-2697
0.002
2
6mer
5022-5037
0.002
2
7mer
2012-2031
0.002
5
6mer
2112-2132
0.002
1
6mer
3780-3799
0.002
2
6mer
6819-6845
0.002
1
LINC01164
hsa-miR-298
0.780
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000341866
Biotype: lincRNA
Gene id: ENSG00000189275
Gene Name: LINC01164
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2745-2770
0.009
1
7mer
389-411
0.007
0
8mer
1836-1854
0.007
1
6mer
3002-3022
0.004
0
7mer
2289-2315
0.003
1
XLOC_010590
hsa-miR-298
0.780
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021989
Biotype: transcript isomorph
Gene id: XLOC_010590
Gene Name: XLOC_010590
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-608
0.031
Not Conserved
SNHG14
hsa-miR-298
0.780
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000424333
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1867-1886
0.011
1
8mer
2045-2064
0.009
0
8mer
607-626
0.006
0
7mer
1356-1374
0.006
1
LINC01192
hsa-miR-298
0.780
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494897
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-56
0.026
Not Conserved
6mer
625-652
0.006
1
XLOC_009783
hsa-miR-298
0.780
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
720-741
0.019
0
7mer
836-857
0.013
0
COLCA1
hsa-miR-298
0.780
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540738
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4880-4893
0.022
9
7mer
1033-1045
0.008
1
7mer
4412-4435
0.002
0
LINC01192
hsa-miR-298
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492553
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-54
0.025
Not Conserved
6mer
733-757
0.006
1
XLOC_004117
hsa-miR-298
0.779
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008615
Biotype: transcript isomorph
Gene id: XLOC_004117
Gene Name: XLOC_004117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-61
0.031
1
XLOC_011484
hsa-miR-298
0.778
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
30-45
0.018
0
6mer
365-375
0.013
0
XLOC_002900
hsa-miR-298
0.778
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006294
Biotype: transcript isomorph
Gene id: XLOC_002900
Gene Name: XLOC_002900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2997-3014
0.026
0
6mer
994-1017
0.002
2
6mer
2548-2570
0.002
1
6mer
1541-1562
0.001
0
LOC283070
hsa-miR-298
0.778
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027322.1
Biotype: sense
Gene id: NR_027322.1 (gene)
Gene Name: LOC283070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1433-1445
0.031
8
U91328.19
hsa-miR-298
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606723
Biotype: lincRNA
Gene id: ENSG00000272462
Gene Name: U91328.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3339-3357
0.017
1
7mer
4014-4027
0.006
0
7mer
1672-1686
0.006
0
6mer
3221-3246
0.003
2
TMEM161B-AS1
hsa-miR-298
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105020.1
Biotype: lincRNA
Gene id: NR_105020.1 (gene)
Gene Name: TMEM161B-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-94
0.026
11
6mer
167-181
0.005
1
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