LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP4-798P15.3
hsa-miR-298
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000464428
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2553-2574
0.019
9
8mer
5498-5516
0.010
3
7mer
3438-3453
0.003
1
XLOC_001046
hsa-miR-298
0.790
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001691
Biotype: transcript isomorph
Gene id: XLOC_001046
Gene Name: XLOC_001046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
829-842
0.013
2
7mer
517-529
0.010
1
7mer
851-873
0.009
0
XLOC_012103
hsa-miR-298
0.790
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025299
Biotype: transcript isomorph
Gene id: XLOC_012103
Gene Name: XLOC_012103
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
719-743
0.019
1
9mer
326-345
0.013
2
RP3-332B22.1
hsa-miR-298
0.789
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000446458
Biotype: lincRNA
Gene id: ENSG00000236013
Gene Name: RP3-332B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-175
0.032
2
RP11-809F4.3
hsa-miR-298
0.789
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
450-465
0.011
1
6mer
1222-1241
0.010
1
7mer
680-694
0.009
0
6mer
765-769
0.003
Not Conserved
XLOC_009428
hsa-miR-298
0.789
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019627
Biotype: transcript isomorph
Gene id: XLOC_009428
Gene Name: XLOC_009428
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-94
0.016
1
8mer
193-217
0.012
1
6mer
327-346
0.004
1
XLOC_013779
hsa-miR-298
0.789
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3513-3532
0.027
1
6mer
550-565
0.002
Not Conserved
6mer
207-218
0.002
Not Conserved
6mer
1037-1052
0.001
Not Conserved
AC012594.1
hsa-miR-298
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608050
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
631-648
0.026
2
6mer
25-48
0.006
3
LINC00837
hsa-miR-298
0.788
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446012
Biotype: lincRNA
Gene id: ENSG00000235824
Gene Name: LINC00837
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-74
0.027
0
6mer
183-207
0.005
0
AC090587.2
hsa-miR-298
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000507938
Biotype: sense_overlapping
Gene id: ENSG00000250404
Gene Name: AC090587.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-729
0.029
9
7mer
477-496
0.003
1
XLOC_003204
hsa-miR-298
0.787
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006588
Biotype: transcript isomorph
Gene id: XLOC_003204
Gene Name: XLOC_003204
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-477
0.009
1
7mer
922-938
0.008
2
7mer
646-665
0.007
1
6mer
1950-1976
0.004
3
6mer
2504-2521
0.003
1
NPHP3-AS1
hsa-miR-298
0.787
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504440
Biotype: antisense
Gene id: ENSG00000248724
Gene Name: NPHP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2353-2374
0.014
2
7mer
2275-2294
0.012
3
7mer
1109-1131
0.005
0
XLOC_006123
hsa-miR-298
0.786
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013475
Biotype: transcript isomorph
Gene id: XLOC_006123
Gene Name: XLOC_006123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2135-2152
0.016
Not Conserved
7mer
1920-1932
0.010
Not Conserved
7mer
1302-1313
0.004
Not Conserved
6mer
1843-1868
0.002
Not Conserved
RP11-424M24.5
hsa-miR-298
0.786
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574178
Biotype: lincRNA
Gene id: ENSG00000262890
Gene Name: RP11-424M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-274
0.017
3
6mer
121-141
0.006
3
6mer
469-494
0.005
2
6mer
295-322
0.004
1
RP11-434D2.7
hsa-miR-298
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587907
Biotype: lincRNA
Gene id: ENSG00000266925
Gene Name: RP11-434D2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-19
0.029
0
6mer
728-747
0.003
0
XLOC_000615
hsa-miR-298
0.785
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000418
Biotype: transcript isomorph
Gene id: XLOC_000615
Gene Name: XLOC_000615
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
857-880
0.032
2
RP11-153K16.1
hsa-miR-298
0.785
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000534841
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-628
0.032
1
RP11-37B2.1
hsa-miR-298
0.785
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504145
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-177
0.021
0
7mer
888-911
0.009
1
6mer
1209-1226
0.002
0
RP11-394J1.2
hsa-miR-298
0.785
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551844
Biotype: antisense
Gene id: ENSG00000258177
Gene Name: RP11-394J1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-249
0.032
4
AP000997.2
hsa-miR-298
0.785
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1273-1289
0.008
1
9mer
3006-3020
0.006
0
7mer
765-786
0.003
0
7mer
3402-3419
0.003
2
7mer
6099-6120
0.003
1
6mer
1086-1109
0.002
2
7mer
5756-5781
0.002
1
6mer
5951-5967
0.002
3
8mer
5955-5976
0.002
1
6mer
4065-4083
0.001
1
6mer
6155-6171
0.000
0
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