LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
NR2F1-AS1
hsa-miR-298
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606739
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-68
0.033
2
RP1-27K12.2
hsa-miR-298
0.795
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000502390
Biotype: lincRNA
Gene id: ENSG00000231683
Gene Name: RP1-27K12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3305-3330
0.019
0
7mer
369-386
0.010
0
7mer
2862-2874
0.004
1
INTS6-AS1
hsa-miR-298
0.795
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000599315
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-718
0.033
0
LINC00410
hsa-miR-298
0.794
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419272
Biotype: lincRNA
Gene id: ENSG00000231674
Gene Name: LINC00410
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-416
0.015
1
7mer
1690-1715
0.014
0
6mer
1084-1102
0.002
1
6mer
1637-1661
0.002
1
COLCA1
hsa-miR-298
0.794
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000355430
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4823-4836
0.022
9
7mer
976-988
0.009
1
7mer
4355-4378
0.002
0
CTD-2561B21.3
hsa-miR-298
0.794
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571591
Biotype: antisense
Gene id: ENSG00000262662
Gene Name: CTD-2561B21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-160
0.017
1
8mer
282-300
0.016
6
RP11-35G9.3
hsa-miR-298
0.794
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592201
Biotype: antisense
Gene id: ENSG00000267040
Gene Name: RP11-35G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1922-1935
0.014
2
7mer
123-144
0.011
1
7mer
1792-1809
0.008
1
PAX8-AS1
hsa-miR-298
0.794
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10912-10934
0.018
1
7mer
2983-3001
0.004
1
7mer
5672-5692
0.004
0
6mer
1863-1889
0.002
1
8mer
5922-5944
0.002
0
6mer
7093-7107
0.001
0
6mer
3564-3589
0.001
0
6mer
4676-4688
0.001
1
XLOC_006555
hsa-miR-298
0.793
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013220
Biotype: transcript isomorph
Gene id: XLOC_006555
Gene Name: XLOC_006555
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-260
0.020
2
7mer
964-985
0.010
1
6mer
544-569
0.003
0
AC079790.2
hsa-miR-298
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420365
Biotype: antisense
Gene id: ENSG00000225214
Gene Name: AC079790.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
196-215
0.023
2
6mer
450-474
0.009
4
MIR7515HG
hsa-miR-298
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588145
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-73
0.015
0
8mer
400-414
0.012
0
7mer
553-573
0.006
1
RP11-840I19.5
hsa-miR-298
0.793
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000606934
Biotype: antisense
Gene id: ENSG00000272158
Gene Name: RP11-840I19.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-199
0.033
1
MIR663AHG
hsa-miR-298
0.792
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000598451
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-342
0.018
0
6mer
15-31
0.015
2
RP11-24C3.2
hsa-miR-298
0.792
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000438872
Biotype: antisense
Gene id: ENSG00000244380
Gene Name: RP11-24C3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-245
0.018
3
7mer
207-223
0.012
4
7mer
646-663
0.003
0
RP11-384P7.7
hsa-miR-298
0.792
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566968
Biotype: lincRNA
Gene id: ENSG00000260947
Gene Name: RP11-384P7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
834-853
0.027
2
6mer
1023-1044
0.003
1
6mer
2462-2485
0.003
1
SNHG6
hsa-miR-298
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520619
Biotype: lincRNA
Gene id: ENSG00000245910
Gene Name: SNHG6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-137
0.029
1
7mer
389-399
0.004
Not Conserved
RP11-553P9.3
hsa-miR-298
0.792
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511899
Biotype: lincRNA
Gene id: ENSG00000248456
Gene Name: RP11-553P9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-214
0.019
2
7mer
503-527
0.014
4
NPHP3-AS1
hsa-miR-298
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_002811.1
Biotype: antisense
Gene id: NR_002811.1 (gene)
Gene Name: NPHP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2353-2374
0.015
2
7mer
2275-2294
0.013
3
7mer
1109-1131
0.005
0
CTB-164N12.1
hsa-miR-298
0.791
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518605
Biotype: lincRNA
Gene id: ENSG00000253141
Gene Name: CTB-164N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-59
0.032
2
XLOC_005361
hsa-miR-298
0.790
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012534
Biotype: transcript isomorph
Gene id: XLOC_005361
Gene Name: XLOC_005361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-896
0.032
1
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