LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
FLJ41278
hsa-miR-298
0.801
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_033988.1
Biotype: lincRNA
Gene id: NR_033988.1 (gene)
Gene Name: FLJ41278
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-348
0.022
4
7mer
651-669
0.007
1
8mer
2565-2589
0.004
1
CTA-292E10.9
hsa-miR-298
0.801
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-365
0.007
1
7mer
3867-3885
0.006
2
7mer
7323-7345
0.005
2
7mer
13877-13891
0.004
2
7mer
12004-12022
0.004
1
6mer
4233-4254
0.002
5
6mer
19516-19528
0.002
0
6mer
16727-16752
0.002
1
6mer
5886-5902
0.001
0
6mer
8716-8739
0.001
0
6mer
8417-8442
0.001
0
XLOC_004839
hsa-miR-298
0.801
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010350
Biotype: transcript isomorph
Gene id: XLOC_004839
Gene Name: XLOC_004839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1343-1361
0.012
2
7mer
3433-3456
0.011
1
7mer
3193-3213
0.006
1
6mer
602-627
0.003
1
6mer
1159-1183
0.003
1
UG0898H09
hsa-miR-298
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622794
Biotype: lincRNA
Gene id: ENSG00000274956
Gene Name: UG0898H09
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-119
0.009
0
6mer
3741-3751
0.008
4
6mer
3302-3323
0.006
6
9mer
1138-1163
0.004
1
6mer
419-439
0.003
1
6mer
373-398
0.003
1
6mer
105-127
0.002
0
CTB-49A3.5
hsa-miR-298
0.800
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515122
Biotype: antisense
Gene id: ENSG00000249478
Gene Name: CTB-49A3.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2743-2765
0.025
4
6mer
2224-2247
0.003
4
6mer
152-173
0.003
1
6mer
674-689
0.002
1
6mer
2022-2044
0.002
1
LOC101927881
hsa-miR-298
0.799
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110278.1
Biotype: lincRNA
Gene id: NR_110278.1 (gene)
Gene Name: LOC101927881
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-397
0.033
1
LINC00702
hsa-miR-298
0.799
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608792
Biotype: lincRNA
Gene id: ENSG00000233117
Gene Name: LINC00702
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-493
0.016
1
7mer
33-59
0.008
Not Conserved
7mer
3099-3122
0.004
1
6mer
5705-5723
0.003
0
7mer
3403-3424
0.002
1
C14orf23
hsa-miR-298
0.799
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000399387
Biotype: lincRNA
Gene id: ENSG00000186960
Gene Name: C14orf23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-96
0.033
6
TAPT1-AS1
hsa-miR-298
0.799
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000573950
Biotype: antisense
Gene id: ENSG00000263327
Gene Name: TAPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-72
0.033
4
RP11-44F21.2
hsa-miR-298
0.798
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513770
Biotype: antisense
Gene id: ENSG00000248165
Gene Name: RP11-44F21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-195
0.033
2
XLOC_013356
hsa-miR-298
0.798
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027767
Biotype: transcript isomorph
Gene id: XLOC_013356
Gene Name: XLOC_013356
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-455
0.023
4
7mer
213-231
0.010
2
XLOC_010669
hsa-miR-298
0.798
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022063
Biotype: transcript isomorph
Gene id: XLOC_010669
Gene Name: XLOC_010669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
362-386
0.020
1
6mer
1378-1388
0.007
0
7mer
821-848
0.006
0
RP3-333B15.6
hsa-miR-298
0.798
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615088
Biotype: lincRNA
Gene id: ENSG00000276638
Gene Name: RP3-333B15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
331-349
0.025
1
7mer
515-536
0.008
1
AC005324.6
hsa-miR-298
0.797
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433873
Biotype: antisense
Gene id: ENSG00000233002
Gene Name: AC005324.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-119
0.033
1
XLOC_008522
hsa-miR-298
0.797
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018246
Biotype: transcript isomorph
Gene id: XLOC_008522
Gene Name: XLOC_008522
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3113-3128
0.012
1
7mer
2120-2137
0.006
3
6mer
3577-3593
0.006
1
7mer
359-385
0.004
1
7mer
3067-3088
0.003
1
6mer
2659-2686
0.002
0
RP11-572C15.5
hsa-miR-298
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481624
Biotype: lincRNA
Gene id: ENSG00000240893
Gene Name: RP11-572C15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1459-1485
0.022
1
6mer
484-510
0.008
5
6mer
1023-1036
0.002
2
XLOC_011102
hsa-miR-298
0.797
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022831
Biotype: transcript isomorph
Gene id: XLOC_011102
Gene Name: XLOC_011102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2423-2448
0.033
5
RP11-572C15.5
hsa-miR-298
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110017.1
Biotype: sense
Gene id: NR_110017.1 (gene)
Gene Name: RP11-572C15.5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1457-1483
0.022
1
6mer
482-508
0.008
5
6mer
1021-1034
0.002
2
RP11-883G14.4
hsa-miR-298
0.796
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569009
Biotype: lincRNA
Gene id: ENSG00000260620
Gene Name: RP11-883G14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-436
0.014
1
7mer
65-79
0.011
1
6mer
95-111
0.004
2
6mer
142-158
0.003
0
RP11-88I18.3
hsa-miR-298
0.796
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000434656
Biotype: sense_intronic
Gene id: ENSG00000229019
Gene Name: RP11-88I18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
610-633
0.011
6
6mer
160-175
0.008
4
6mer
845-866
0.008
2
6mer
301-324
0.005
1
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