LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
HIF1A-AS2
hsa-miR-298
0.806
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554254
Biotype: lincRNA
Gene id: ENSG00000258667
Gene Name: HIF1A-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-316
0.017
0
7mer
283-308
0.011
1
7mer
213-233
0.006
0
SNHG14
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000453082
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5865-5886
0.007
4
7mer
5679-5701
0.006
2
7mer
873-897
0.005
1
7mer
2128-2144
0.003
0
7mer
1510-1535
0.003
0
7mer
2321-2344
0.003
1
7mer
4157-4174
0.002
Not Conserved
7mer
1054-1073
0.002
1
7mer
2893-2909
0.002
1
SNHG6
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521127
Biotype: retained_intron
Gene id: ENSG00000245910
Gene Name: SNHG6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-93
0.030
1
6mer
24-38
0.004
0
RP11-156L14.1
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582564
Biotype: antisense
Gene id: ENSG00000265702
Gene Name: RP11-156L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-593
0.019
4
8mer
1360-1372
0.010
0
6mer
1915-1938
0.005
3
XLOC_010783
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022455
Biotype: transcript isomorph
Gene id: XLOC_010783
Gene Name: XLOC_010783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-167
0.028
1
6mer
79-106
0.006
1
LINC00649
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427447
Biotype: antisense
Gene id: ENSG00000237945
Gene Name: LINC00649
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6700-6719
0.015
2
7mer
3528-3551
0.006
0
7mer
362-388
0.006
0
6mer
5824-5850
0.002
1
7mer
3710-3733
0.002
0
6mer
6949-6972
0.002
0
6mer
7281-7297
0.001
1
6mer
3616-3632
0.001
1
XLOC_011763
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024442
Biotype: transcript isomorph
Gene id: XLOC_011763
Gene Name: XLOC_011763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-127
0.030
1
6mer
99-122
0.004
1
XLOC_012981
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
842-860
0.027
0
7mer
1850-1875
0.007
Not Conserved
RP11-37B2.1
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000621883
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-206
0.021
0
7mer
3059-3079
0.006
2
7mer
1153-1167
0.004
0
7mer
1942-1964
0.002
1
RP11-254I22.3
hsa-miR-298
0.805
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502437
Biotype: lincRNA
Gene id: ENSG00000249746
Gene Name: RP11-254I22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-221
0.020
1
8mer
207-228
0.014
1
AC016907.3
hsa-miR-298
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420016
Biotype: antisense
Gene id: ENSG00000233862
Gene Name: AC016907.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-468
0.028
3
7mer
317-341
0.005
Not Conserved
LL22NC03-63E9.3
hsa-miR-298
0.804
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000407120
Biotype: antisense
Gene id: ENSG00000220891
Gene Name: LL22NC03-63E9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-40
0.008
1
8mer
1279-1303
0.007
1
7mer
1512-1536
0.006
1
7mer
1862-1886
0.005
1
6mer
2260-2282
0.003
0
6mer
365-386
0.002
1
6mer
1000-1026
0.002
0
6mer
378-398
0.002
0
MTHFS
hsa-miR-298
0.803
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000615374
Biotype: lincRNA
Gene id: ENSG00000261229
Gene Name: MTHFS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-344
0.018
Not Conserved
8mer
445-467
0.006
0
7mer
980-993
0.005
1
6mer
2035-2062
0.004
3
XLOC_009696
hsa-miR-298
0.802
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020366
Biotype: transcript isomorph
Gene id: XLOC_009696
Gene Name: XLOC_009696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
954-980
0.034
3
CTA-796E4.5
hsa-miR-298
0.802
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13681-13700
0.007
1
6mer
487-502
0.004
1
6mer
29514-29538
0.003
4
9mer
4955-4979
0.003
3
7mer
16796-16817
0.002
0
7mer
8930-8952
0.002
0
7mer
27307-27330
0.002
0
6mer
1969-1988
0.002
1
6mer
18217-18227
0.002
2
7mer
4246-4273
0.002
1
6mer
14680-14703
0.002
2
6mer
5225-5250
0.001
0
6mer
4290-4312
0.001
1
6mer
25490-25512
0.001
0
XLOC_012582
hsa-miR-298
0.802
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025772
Biotype: transcript isomorph
Gene id: XLOC_012582
Gene Name: XLOC_012582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-421
0.034
0
XLOC_004625
hsa-miR-298
0.802
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010162
Biotype: transcript isomorph
Gene id: XLOC_004625
Gene Name: XLOC_004625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-312
0.025
0
7mer
32-54
0.008
Not Conserved
LINC00475
hsa-miR-298
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027341.1
Biotype: lincRNA
Gene id: NR_027341.1 (gene)
Gene Name: LINC00475
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1144-1165
0.019
0
7mer
1172-1194
0.014
0
CTB-43E15.1
hsa-miR-298
0.802
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523242
Biotype: lincRNA
Gene id: ENSG00000253959
Gene Name: CTB-43E15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
464-491
0.034
1
XLOC_001666
hsa-miR-298
0.801
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002721
Biotype: transcript isomorph
Gene id: XLOC_001666
Gene Name: XLOC_001666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-392
0.034
1
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