LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-15H20.6
hsa-miR-298
0.987
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-980
0.036
1
6mer
454-477
0.016
1
6mer
1455-1475
0.012
1
7mer
1381-1403
0.009
0
6mer
407-421
0.009
1
RP11-466L17.1
hsa-miR-298
0.985
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422374
Biotype: lincRNA
Gene id: ENSG00000234810
Gene Name: RP11-466L17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-631
0.032
1
8mer
204-221
0.020
1
7mer
1179-1202
0.009
1
8mer
2305-2323
0.006
0
6mer
194-216
0.005
1
7mer
2738-2759
0.003
1
7mer
1467-1481
0.003
Not Conserved
6mer
1559-1584
0.001
1
CTD-2017D11.1
hsa-miR-298
0.984
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1712-1731
0.036
1
7mer
36-57
0.034
0
6mer
1423-1445
0.005
0
6mer
308-329
0.004
0
DLX6-AS1
hsa-miR-298
0.984
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437331
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-152
0.035
8
8mer
3804-3818
0.034
7
6mer
336-347
0.005
3
6mer
1687-1702
0.002
3
6mer
1917-1934
0.002
2
LINC01224
hsa-miR-298
0.983
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2338-2353
0.026
1
7mer
1792-1817
0.021
1
7mer
1687-1708
0.012
0
7mer
1611-1633
0.011
0
6mer
1189-1207
0.007
1
XLOC_006126
hsa-miR-298
0.983
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-120
0.043
0
7mer
719-744
0.033
0
XLOC_012997
hsa-miR-298
0.982
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1636-1662
0.058
1
7mer
1126-1147
0.019
1
RP11-410C4.5
hsa-miR-298
0.982
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563417
Biotype: lincRNA
Gene id: ENSG00000260505
Gene Name: RP11-410C4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2056-2072
0.019
1
7mer
2767-2788
0.018
1
8mer
1616-1635
0.013
1
7mer
250-276
0.012
0
7mer
286-305
0.008
0
6mer
807-829
0.004
1
7mer
1624-1650
0.001
1
MIR663AHG
hsa-miR-298
0.981
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000593517
Biotype: retained_intron
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-115
0.076
0
XLOC_013000
hsa-miR-298
0.981
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026939
Biotype: transcript isomorph
Gene id: XLOC_013000
Gene Name: XLOC_013000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
221-240
0.075
0
XLOC_002805
hsa-miR-298
0.981
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006207
Biotype: transcript isomorph
Gene id: XLOC_002805
Gene Name: XLOC_002805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-491
0.067
3
7mer
662-688
0.008
0
CTA-929C8.9
hsa-miR-298
0.980
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24806-24821
0.026
1
8mer
11048-11073
0.014
1
7mer
712-736
0.005
1
6mer
23446-23472
0.004
4
7mer
12546-12573
0.003
1
6mer
997-1016
0.003
1
7mer
15529-15546
0.002
0
6mer
14991-15018
0.002
0
6mer
19680-19691
0.002
0
6mer
8833-8856
0.002
1
7mer
12563-12587
0.002
1
6mer
20397-20418
0.002
0
6mer
10116-10135
0.002
1
6mer
14536-14556
0.002
1
6mer
9283-9303
0.002
Not Conserved
6mer
22200-22219
0.001
Not Conserved
6mer
16308-16328
0.001
1
6mer
17139-17164
0.001
Not Conserved
6mer
1024-1048
0.001
1
6mer
20424-20435
0.001
0
CTC-260E6.6
hsa-miR-298
0.979
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1058-1075
0.060
1
6mer
1017-1041
0.014
1
RP11-445O3.3
hsa-miR-298
0.977
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-369
0.059
0
6mer
2530-2556
0.013
0
RP11-96K19.4
hsa-miR-298
0.977
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3416-3437
0.032
1
6mer
5551-5577
0.014
1
7mer
1359-1376
0.010
1
6mer
899-921
0.009
1
6mer
1527-1553
0.007
1
RP11-362A9.3
hsa-miR-298
0.976
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463255
Biotype: antisense
Gene id: ENSG00000243305
Gene Name: RP11-362A9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-325
0.046
8
7mer
44-66
0.025
8
DLX6-AS1
hsa-miR-298
0.976
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452769
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-245
0.034
8
8mer
3774-3788
0.029
7
6mer
429-440
0.005
3
6mer
2010-2027
0.002
2
6mer
1780-1795
0.002
3
XLOC_009651
hsa-miR-298
0.975
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021052
Biotype: transcript isomorph
Gene id: XLOC_009651
Gene Name: XLOC_009651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-332
0.071
1
CTD-2017D11.1
hsa-miR-298
0.974
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-61
0.037
0
7mer
1389-1408
0.030
1
6mer
1100-1122
0.004
0
RP11-154D17.1
hsa-miR-298
0.971
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000413050
Biotype: lincRNA
Gene id: ENSG00000233926
Gene Name: RP11-154D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-121
0.068
5
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