LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-1038A11.1
hsa-miR-298
0.813
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538430
Biotype: lincRNA
Gene id: ENSG00000255983
Gene Name: RP11-1038A11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-298
0.035
6
RP11-783L4.1
hsa-miR-298
0.813
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557050
Biotype: lincRNA
Gene id: ENSG00000258502
Gene Name: RP11-783L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-469
0.035
1
LINC00964
hsa-miR-298
0.812
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000510897
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3298-3317
0.020
2
7mer
862-886
0.006
1
7mer
1050-1064
0.004
2
7mer
1569-1585
0.003
1
7mer
1071-1081
0.002
2
XLOC_005774
hsa-miR-298
0.811
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012216
Biotype: transcript isomorph
Gene id: XLOC_005774
Gene Name: XLOC_005774
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2173-2189
0.019
0
7mer
1616-1636
0.008
1
7mer
585-603
0.004
1
6mer
389-407
0.003
2
RP11-458F8.4
hsa-miR-298
0.811
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610177
Biotype: lincRNA
Gene id: ENSG00000273142
Gene Name: RP11-458F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2176-2191
0.010
0
8mer
2569-2591
0.007
Not Conserved
6mer
3124-3149
0.005
1
8mer
2260-2286
0.005
0
8mer
1966-1982
0.004
0
7mer
2040-2066
0.002
0
6mer
1837-1863
0.002
0
XLOC_005510
hsa-miR-298
0.810
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011996
Biotype: transcript isomorph
Gene id: XLOC_005510
Gene Name: XLOC_005510
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-125
0.034
3
RP3-439F8.1
hsa-miR-298
0.810
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426112
Biotype: antisense
Gene id: ENSG00000234869
Gene Name: RP3-439F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2618-2642
0.034
1
LINC01146
hsa-miR-298
0.810
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556033
Biotype: lincRNA
Gene id: ENSG00000258867
Gene Name: LINC01146
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-155
0.015
3
8mer
211-230
0.014
2
6mer
178-187
0.006
4
LIPE-AS1
hsa-miR-298
0.810
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597203
Biotype: antisense
Gene id: ENSG00000213904
Gene Name: LIPE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
83-103
0.017
0
7mer
530-554
0.005
0
6mer
189-206
0.004
0
6mer
445-472
0.004
0
6mer
518-542
0.004
1
RP11-95H11.1
hsa-miR-298
0.809
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000561915
Biotype: lincRNA
Gene id: ENSG00000260171
Gene Name: RP11-95H11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-440
0.034
2
RP13-39P12.3
hsa-miR-298
0.809
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600739
Biotype: antisense
Gene id: ENSG00000228748
Gene Name: RP13-39P12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-190
0.034
2
XLOC_011492
hsa-miR-298
0.808
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023690
Biotype: transcript isomorph
Gene id: XLOC_011492
Gene Name: XLOC_011492
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-185
0.020
0
7mer
477-504
0.015
2
AC012531.25
hsa-miR-298
0.808
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562848
Biotype: lincRNA
Gene id: ENSG00000260597
Gene Name: AC012531.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
950-974
0.021
5
6mer
1891-1917
0.006
7
6mer
2272-2287
0.005
5
6mer
1032-1057
0.002
2
RP11-244H3.1
hsa-miR-298
0.807
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417456
Biotype: sense_overlapping
Gene id: ENSG00000241014
Gene Name: RP11-244H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-255
0.024
2
8mer
1116-1134
0.005
2
6mer
926-943
0.002
3
6mer
2217-2240
0.002
0
6mer
1092-1112
0.001
1
LOC285819
hsa-miR-298
0.807
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038992.1
Biotype: antisense
Gene id: NR_038992.1 (gene)
Gene Name: LOC285819
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2724-2745
0.029
0
7mer
987-1006
0.005
0
RP11-140K17.3
hsa-miR-298
0.807
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606971
Biotype: antisense
Gene id: ENSG00000272288
Gene Name: RP11-140K17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-248
0.034
9
XLOC_009222
hsa-miR-298
0.807
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019399
Biotype: transcript isomorph
Gene id: XLOC_009222
Gene Name: XLOC_009222
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4874-4890
0.026
0
6mer
5215-5234
0.008
0
LOC101928505
hsa-miR-298
0.806
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104668.1
Biotype: lincRNA
Gene id: NR_104668.1 (gene)
Gene Name: LOC101928505
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1180-1204
0.017
0
7mer
1000-1024
0.012
1
9mer
42-66
0.005
Not Conserved
AC005358.3
hsa-miR-298
0.806
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000445508
Biotype: antisense
Gene id: ENSG00000227274
Gene Name: AC005358.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
960-974
0.021
0
6mer
897-912
0.013
7
AC068039.4
hsa-miR-298
0.806
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1436-1450
0.022
0
6mer
1676-1702
0.012
0
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