LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
SNHG14
hsa-miR-298
0.821
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000424208
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2509-2528
0.007
1
8mer
2687-2706
0.006
0
7mer
419-437
0.005
0
7mer
2333-2351
0.005
1
8mer
2157-2176
0.004
0
6mer
94-110
0.004
0
7mer
1454-1472
0.003
1
6mer
1053-1078
0.001
0
RP5-1057I20.5
hsa-miR-298
0.821
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000615576
Biotype: antisense
Gene id: ENSG00000276691
Gene Name: RP5-1057I20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-259
0.030
0
6mer
485-505
0.006
0
RP11-153K16.1
hsa-miR-298
0.821
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541288
Biotype: lincRNA
Gene id: ENSG00000256321
Gene Name: RP11-153K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-569
0.036
1
NR2F1-AS1
hsa-miR-298
0.820
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606188
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-71
0.036
2
RP3-377H17.2
hsa-miR-298
0.820
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000512511
Biotype: sense_intronic
Gene id: ENSG00000255608
Gene Name: RP3-377H17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-288
0.023
1
8mer
275-293
0.013
1
XLOC_009823
hsa-miR-298
0.819
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020502
Biotype: transcript isomorph
Gene id: XLOC_009823
Gene Name: XLOC_009823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-242
0.018
Not Conserved
8mer
126-144
0.017
Not Conserved
LINC01123
hsa-miR-298
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000336905
Biotype: lincRNA
Gene id: ENSG00000204588
Gene Name: LINC01123
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-597
0.015
2
8mer
32-50
0.013
1
6mer
71-89
0.007
1
DKFZp434J0226
hsa-miR-298
0.819
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596066
Biotype: retained_intron
Gene id: ENSG00000268460
Gene Name: DKFZp434J0226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-187
0.015
2
8mer
727-753
0.012
Not Conserved
7mer
3278-3301
0.008
0
XLOC_007642
hsa-miR-298
0.819
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016267
Biotype: transcript isomorph
Gene id: XLOC_007642
Gene Name: XLOC_007642
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-247
0.035
3
LINC00964
hsa-miR-298
0.819
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3345-3364
0.020
2
7mer
909-933
0.006
1
7mer
1097-1111
0.005
2
7mer
1616-1632
0.003
1
7mer
1118-1128
0.002
2
RP11-515O17.3
hsa-miR-298
0.817
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576751
Biotype: lincRNA
Gene id: ENSG00000262079
Gene Name: RP11-515O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1592-1619
0.035
0
LINC00899
hsa-miR-298
0.817
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609737
Biotype: retained_intron
Gene id: ENSG00000231711
Gene Name: LINC00899
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-259
0.027
1
6mer
749-771
0.005
3
6mer
1130-1157
0.004
5
NR2F1-AS1
hsa-miR-298
0.817
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606165
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-71
0.035
2
MIR7515HG
hsa-miR-298
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591093
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
598-622
0.013
1
8mer
174-188
0.013
0
7mer
327-347
0.005
1
6mer
664-684
0.004
1
RP11-57H12.3
hsa-miR-298
0.816
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421762
Biotype: antisense
Gene id: ENSG00000226026
Gene Name: RP11-57H12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2053-2073
0.016
4
7mer
1333-1344
0.008
0
7mer
835-851
0.007
Not Conserved
6mer
607-628
0.003
0
6mer
590-615
0.002
0
RP11-297L17.4
hsa-miR-298
0.816
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564331
Biotype: lincRNA
Gene id: ENSG00000261261
Gene Name: RP11-297L17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-527
0.031
4
6mer
435-450
0.004
0
RP13-36G14.4
hsa-miR-298
0.815
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603952
Biotype: sense_intronic
Gene id: ENSG00000270223
Gene Name: RP13-36G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
649-665
0.023
1
6mer
587-611
0.011
1
COLCA1
hsa-miR-298
0.814
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532918
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4880-4893
0.025
9
7mer
1033-1045
0.008
1
7mer
4412-4435
0.002
0
RP11-158K1.3
hsa-miR-298
0.814
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518639
Biotype: antisense
Gene id: ENSG00000253106
Gene Name: RP11-158K1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1990-2012
0.026
1
6mer
2020-2036
0.005
6
7mer
2052-2072
0.004
1
LINC00200
hsa-miR-298
0.813
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000583117
Biotype: lincRNA
Gene id: ENSG00000229205
Gene Name: LINC00200
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-540
0.032
0
6mer
177-197
0.003
Not Conserved
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