LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
RP11-298O21.3
hsa-miR-298
0.835
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470523
Biotype: lincRNA
Gene id: ENSG00000244706
Gene Name: RP11-298O21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-251
0.019
1
7mer
103-129
0.018
4
HPYR1
hsa-miR-298
0.835
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520457
Biotype: lincRNA
Gene id: ENSG00000253521
Gene Name: HPYR1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-209
0.027
0
7mer
481-508
0.010
3
XLOC_013142
hsa-miR-298
0.835
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027619
Biotype: transcript isomorph
Gene id: XLOC_013142
Gene Name: XLOC_013142
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-508
0.034
1
6mer
530-548
0.003
1
AC012594.1
hsa-miR-298
0.835
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609459
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-620
0.026
2
7mer
304-325
0.011
Not Conserved
XLOC_005180
hsa-miR-298
0.835
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011699
Biotype: transcript isomorph
Gene id: XLOC_005180
Gene Name: XLOC_005180
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
710-731
0.037
0
XLOC_013010
hsa-miR-298
0.835
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1138-1157
0.015
0
6mer
64-87
0.013
0
7mer
143-160
0.009
Not Conserved
AC013460.1
hsa-miR-298
0.834
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444955
Biotype: lincRNA
Gene id: ENSG00000229727
Gene Name: AC013460.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-42
0.026
2
7mer
219-234
0.011
1
WWTR1-AS1
hsa-miR-298
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495094
Biotype: antisense
Gene id: ENSG00000241313
Gene Name: WWTR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-293
0.037
5
RP11-530C5.4
hsa-miR-298
0.833
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619055
Biotype: sense_intronic
Gene id: ENSG00000277130
Gene Name: RP11-530C5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-540
0.037
1
XLOC_003249
hsa-miR-298
0.833
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007264
Biotype: transcript isomorph
Gene id: XLOC_003249
Gene Name: XLOC_003249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-720
0.030
2
6mer
562-572
0.007
2
LINC01191
hsa-miR-298
0.832
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412690
Biotype: lincRNA
Gene id: ENSG00000234199
Gene Name: LINC01191
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
792-812
0.034
1
6mer
629-647
0.002
Not Conserved
ZNF667-AS1
hsa-miR-298
0.831
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588685
Biotype: lincRNA
Gene id: ENSG00000166770
Gene Name: ZNF667-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1269-1288
0.028
1
7mer
1281-1300
0.007
0
7mer
685-707
0.002
1
MIR7515HG
hsa-miR-298
0.831
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588330
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
994-1018
0.020
1
8mer
500-514
0.010
0
7mer
723-743
0.007
1
XLOC_001061
hsa-miR-298
0.831
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001702
Biotype: transcript isomorph
Gene id: XLOC_001061
Gene Name: XLOC_001061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-652
0.023
1
7mer
612-637
0.014
1
XLOC_007573
hsa-miR-298
0.831
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016162
Biotype: transcript isomorph
Gene id: XLOC_007573
Gene Name: XLOC_007573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1337-1357
0.022
1
8mer
187-212
0.015
2
LOC284581
hsa-miR-298
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
44-61
0.027
0
6mer
1403-1418
0.010
1
GLIDR
hsa-miR-298
0.830
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_015363.1
Biotype: lincRNA
Gene id: NR_015363.1 (gene)
Gene Name: GLIDR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
205-223
0.015
1
6mer
241-258
0.013
1
6mer
282-306
0.008
0
XLOC_004059
hsa-miR-298
0.829
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008565
Biotype: transcript isomorph
Gene id: XLOC_004059
Gene Name: XLOC_004059
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
889-908
0.037
1
LINC00654
hsa-miR-298
0.829
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000379053
Biotype: lincRNA
Gene id: ENSG00000205181
Gene Name: LINC00654
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-492
0.009
1
8mer
3608-3631
0.008
1
7mer
887-903
0.006
0
7mer
5499-5515
0.004
0
9mer
3213-3235
0.003
0
7mer
5186-5203
0.002
1
7mer
3076-3101
0.002
Not Conserved
6mer
1405-1430
0.002
0
7mer
3499-3514
0.001
Not Conserved
XLOC_002307
hsa-miR-298
0.828
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004435
Biotype: transcript isomorph
Gene id: XLOC_002307
Gene Name: XLOC_002307
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-125
0.024
1
6mer
9-23
0.013
3
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