LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
XLOC_000294
hsa-miR-298
0.842
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-138
0.019
2
7mer
8841-8857
0.009
3
7mer
1399-1420
0.006
3
6mer
128-154
0.004
1
SMAD1-AS1
hsa-miR-298
0.842
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513542
Biotype: antisense
Gene id: ENSG00000250902
Gene Name: SMAD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-371
0.038
11
MIR663AHG
hsa-miR-298
0.841
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000601901
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-342
0.019
0
6mer
15-31
0.019
2
AC011330.13
hsa-miR-298
0.841
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621680
Biotype: sense_intronic
Gene id: ENSG00000275601
Gene Name: AC011330.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-284
0.016
1
7mer
407-428
0.014
2
7mer
437-455
0.008
Not Conserved
MIR663AHG
hsa-miR-298
0.841
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000597267
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
15-31
0.019
2
7mer
321-342
0.019
0
XLOC_002746
hsa-miR-298
0.841
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006143
Biotype: transcript isomorph
Gene id: XLOC_002746
Gene Name: XLOC_002746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-64
0.011
1
8mer
9115-9136
0.010
1
7mer
603-623
0.010
1
7mer
7672-7697
0.006
2
6mer
6848-6870
0.001
1
TSIX
hsa-miR-298
0.841
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31934-31949
0.007
1
8mer
23504-23529
0.007
1
7mer
1122-1143
0.006
3
7mer
26518-26539
0.004
2
7mer
34905-34921
0.003
1
6mer
28589-28607
0.003
3
6mer
25697-25714
0.002
1
6mer
21676-21696
0.001
2
6mer
8576-8592
0.001
0
6mer
35016-35042
0.001
2
6mer
26713-26728
0.001
0
6mer
34124-34141
0.001
Not Conserved
7mer
25817-25833
0.001
0
6mer
25738-25764
0.001
1
RP11-744K17.2
hsa-miR-298
0.840
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-469
0.038
1
RP11-960L18.1
hsa-miR-298
0.840
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565272
Biotype: lincRNA
Gene id: ENSG00000261218
Gene Name: RP11-960L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
699-726
0.038
2
AC009501.4
hsa-miR-298
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437346
Biotype: antisense
Gene id: ENSG00000231609
Gene Name: AC009501.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-27
0.038
12
RP11-819C21.1
hsa-miR-298
0.839
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-712
0.020
2
7mer
520-539
0.012
1
6mer
866-887
0.006
1
XLOC_013708
hsa-miR-298
0.839
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1058-1083
0.014
0
6mer
1293-1318
0.013
0
6mer
1157-1182
0.011
0
XLOC_013018
hsa-miR-298
0.839
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026966
Biotype: transcript isomorph
Gene id: XLOC_013018
Gene Name: XLOC_013018
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-344
0.038
Not Conserved
RP11-159D12.2
hsa-miR-298
0.838
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
339-366
0.025
4
7mer
225-240
0.013
7
CTD-2307P3.1
hsa-miR-298
0.838
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557251
Biotype: sense_overlapping
Gene id: ENSG00000258394
Gene Name: CTD-2307P3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-389
0.038
1
AC008277.1
hsa-miR-298
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594921
Biotype: antisense
Gene id: ENSG00000223642
Gene Name: AC008277.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-354
0.038
7
GS1-72M22.1
hsa-miR-298
0.838
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607058
Biotype: antisense
Gene id: ENSG00000272163
Gene Name: GS1-72M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2041-2063
0.023
13
7mer
2001-2016
0.012
13
6mer
1591-1616
0.002
5
6mer
1402-1421
0.001
0
NR2F1-AS1
hsa-miR-298
0.837
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607195
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-56
0.034
2
6mer
521-543
0.003
2
XLOC_014110
hsa-miR-298
0.837
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029171
Biotype: transcript isomorph
Gene id: XLOC_014110
Gene Name: XLOC_014110
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1129-1152
0.036
2
6mer
1412-1431
0.001
0
6mer
2870-2894
0.001
0
CTA-392E5.1
hsa-miR-298
0.836
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518266
Biotype: lincRNA
Gene id: ENSG00000253154
Gene Name: CTA-392E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-300
0.037
2
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