LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
XLOC_000540
hsa-miR-298
0.856
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001252
Biotype: transcript isomorph
Gene id: XLOC_000540
Gene Name: XLOC_000540
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-275
0.040
1
XLOC_006010
hsa-miR-298
0.855
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013378
Biotype: transcript isomorph
Gene id: XLOC_006010
Gene Name: XLOC_006010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1677-1701
0.024
2
7mer
643-656
0.009
2
6mer
385-403
0.006
3
RP11-168K11.3
hsa-miR-298
0.855
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3008-3034
0.018
1
6mer
2997-3019
0.007
2
6mer
2526-2552
0.007
4
6mer
285-310
0.004
1
7mer
1040-1056
0.004
1
XLOC_011549
hsa-miR-298
0.854
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023757
Biotype: transcript isomorph
Gene id: XLOC_011549
Gene Name: XLOC_011549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-104
0.040
1
WWTR1-AS1
hsa-miR-298
0.854
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466836
Biotype: antisense
Gene id: ENSG00000241313
Gene Name: WWTR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-261
0.040
5
LINC01142
hsa-miR-298
0.854
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440404
Biotype: lincRNA
Gene id: ENSG00000224286
Gene Name: LINC01142
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1224-1247
0.018
3
7mer
115-137
0.016
2
6mer
134-152
0.006
4
AF124730.4
hsa-miR-298
0.854
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000430001
Biotype: antisense
Gene id: ENSG00000224649
Gene Name: AF124730.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-89
0.022
3
8mer
111-131
0.018
0
AC004009.3
hsa-miR-298
0.854
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412413
Biotype: lincRNA
Gene id: ENSG00000224322
Gene Name: AC004009.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-325
0.040
5
CTA-125H2.2
hsa-miR-298
0.853
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000594542
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-273
0.039
6
AC013460.1
hsa-miR-298
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419713
Biotype: lincRNA
Gene id: ENSG00000229727
Gene Name: AC013460.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-57
0.025
2
7mer
221-246
0.014
Not Conserved
FGF14-IT1
hsa-miR-298
0.852
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607251
Biotype: sense_intronic
Gene id: ENSG00000243319
Gene Name: FGF14-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-11
0.039
1
RP11-400K9.4
hsa-miR-298
0.851
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000426023
Biotype: lincRNA
Gene id: ENSG00000237807
Gene Name: RP11-400K9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
901-924
0.013
1
7mer
1083-1107
0.011
1
7mer
161-181
0.010
Not Conserved
6mer
1681-1697
0.003
1
7mer
1759-1785
0.003
0
RP11-251P6.1
hsa-miR-298
0.851
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000597635
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-106
0.039
2
XLOC_008075
hsa-miR-298
0.850
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016940
Biotype: transcript isomorph
Gene id: XLOC_008075
Gene Name: XLOC_008075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-103
0.039
0
RP11-29B9.2
hsa-miR-298
0.850
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000435444
Biotype: lincRNA
Gene id: ENSG00000231902
Gene Name: RP11-29B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
369-395
0.039
4
AC098823.3
hsa-miR-298
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415174
Biotype: lincRNA
Gene id: ENSG00000226125
Gene Name: AC098823.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2073-2090
0.026
2
7mer
20-46
0.010
1
6mer
371-389
0.003
1
RP11-362K2.2
hsa-miR-298
0.850
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552519
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
790-817
0.032
5
7mer
186-203
0.007
1
XLOC_008808
hsa-miR-298
0.849
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017973
Biotype: transcript isomorph
Gene id: XLOC_008808
Gene Name: XLOC_008808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-476
0.023
0
6mer
14-35
0.009
0
6mer
461-484
0.007
0
AC013460.1
hsa-miR-298
0.849
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441014
Biotype: lincRNA
Gene id: ENSG00000229727
Gene Name: AC013460.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-67
0.026
2
7mer
231-256
0.013
Not Conserved
TMX2-CTNND1
hsa-miR-298
0.849
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5809-5832
0.014
0
8mer
5232-5253
0.011
3
7mer
5415-5430
0.006
6
7mer
4026-4051
0.004
1
6mer
2684-2699
0.002
5
6mer
4114-4140
0.001
5
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