LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-298


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Gene
miRNA
Score
DIANA Links
AC137934.1
hsa-miR-298
0.863
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566864
Biotype: lincRNA
Gene id: ENSG00000260923
Gene Name: AC137934.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-674
0.041
0
LINC00989
hsa-miR-298
0.863
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515544
Biotype: lincRNA
Gene id: ENSG00000250334
Gene Name: LINC00989
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1816-1833
0.034
5
6mer
1378-1400
0.004
5
6mer
768-791
0.003
1
RP13-487P22.1
hsa-miR-298
0.862
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565581
Biotype: sense_intronic
Gene id: ENSG00000261529
Gene Name: RP13-487P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-326
0.017
0
7mer
1525-1542
0.013
0
7mer
1454-1474
0.011
1
LINC00989
hsa-miR-298
0.862
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508174
Biotype: lincRNA
Gene id: ENSG00000250334
Gene Name: LINC00989
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1842-1859
0.034
5
6mer
1404-1426
0.004
5
6mer
794-817
0.003
1
XLOC_007469
hsa-miR-298
0.861
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016652
Biotype: transcript isomorph
Gene id: XLOC_007469
Gene Name: XLOC_007469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-283
0.040
0
XLOC_011610
hsa-miR-298
0.859
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023836
Biotype: transcript isomorph
Gene id: XLOC_011610
Gene Name: XLOC_011610
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1277-1293
0.020
0
7mer
1032-1049
0.013
1
6mer
1157-1180
0.007
4
RP11-76E17.2
hsa-miR-298
0.859
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553477
Biotype: lincRNA
Gene id: ENSG00000259123
Gene Name: RP11-76E17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-273
0.031
1
6mer
101-124
0.009
3
RP11-173D14.3
hsa-miR-298
0.859
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430931
Biotype: lincRNA
Gene id: ENSG00000229495
Gene Name: RP11-173D14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2488-2512
0.030
2
9mer
1088-1103
0.010
2
AC010894.3
hsa-miR-298
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417038
Biotype: lincRNA
Gene id: ENSG00000226853
Gene Name: AC010894.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-390
0.040
1
RP11-468E2.11
hsa-miR-298
0.859
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619226
Biotype: sense_intronic
Gene id: ENSG00000278784
Gene Name: RP11-468E2.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-123
0.040
1
MIR7515HG
hsa-miR-298
0.858
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588051
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-19
0.018
0
7mer
534-558
0.013
1
7mer
263-283
0.006
1
6mer
600-620
0.004
1
RP11-629E24.2
hsa-miR-298
0.858
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000585222
Biotype: lincRNA
Gene id: ENSG00000266505
Gene Name: RP11-629E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-28
0.030
1
8mer
1241-1257
0.010
1
XLOC_009815
hsa-miR-298
0.858
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020490
Biotype: transcript isomorph
Gene id: XLOC_009815
Gene Name: XLOC_009815
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-336
0.040
7
RP11-723O4.9
hsa-miR-298
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567253
Biotype: lincRNA
Gene id: ENSG00000261159
Gene Name: RP11-723O4.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-322
0.017
1
7mer
164-180
0.013
0
6mer
281-303
0.011
1
RP5-855D21.1
hsa-miR-298
0.857
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606572
Biotype: antisense
Gene id: ENSG00000272240
Gene Name: RP5-855D21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-60
0.040
1
RP11-315D16.4
hsa-miR-298
0.857
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612894
Biotype: lincRNA
Gene id: ENSG00000260657
Gene Name: RP11-315D16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-201
0.040
1
LINC01192
hsa-miR-298
0.857
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462928
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-53
0.026
Not Conserved
8mer
391-409
0.014
Not Conserved
XLOC_005906
hsa-miR-298
0.856
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011606
Biotype: transcript isomorph
Gene id: XLOC_005906
Gene Name: XLOC_005906
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1089-1107
0.024
0
6mer
971-986
0.016
0
RP4-565E6.1
hsa-miR-298
0.856
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000496508
Biotype: lincRNA
Gene id: ENSG00000227733
Gene Name: RP4-565E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
773-799
0.034
2
6mer
701-722
0.006
5
CTD-2026K11.4
hsa-miR-298
0.856
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621523
Biotype: antisense
Gene id: ENSG00000275454
Gene Name: CTD-2026K11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-298
Sequence: agcagaagcagggagguucuccca
MirBase ID: MIMAT0004901
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
358-383
0.038
10
6mer
689-714
0.002
0
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